UHGV-0082357

Genome information

Genome length 24,369 bps

CDS count 39

Completeness 64.18% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082357
vOTU ID	vOTU-040421
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_166529
BioSample	SAMEA3136653
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.73
Jumbo phage	No

Genome content
Genome length	24,369 bps
GC content	43.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.74%
Average CDS length	589.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082357_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0082357_1	UniRef90	UniRef90_R6SPW0	Tyr recombinase domain-containing protein	NA
UHGV-0082357_1	eggNOG-mapper	1235798.C817_04751	Belongs to the 'phage' integrase family	NA
UHGV-0082357_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0082357_1	Structural annotation	PF00589, MF_01807, NF007246, COG4974	NA	NA
UHGV-0082357_2	UniRef90	UniRef90_A0A3D1I232	zinc_ribbon_2 domain-containing protein	NA
UHGV-0082357_2	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0082357_2	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0082357_3	PHROG	phrog_87	metallo-protease	other
UHGV-0082357_3	UniRef90	UniRef90_A0A1C5SMT9	Metallopeptidase immA	NA
UHGV-0082357_3	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0082357_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0082357_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0082357_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0082357_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0082357_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082357_4	UniRef90	UniRef90_A0A414AEF9	XRE family transcriptional regulator	NA
UHGV-0082357_4	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0082357_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082357_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0082357_4	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0082357_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082357_5	UniRef90	UniRef90_UPI001106D2A7	helix-turn-helix domain-containing protein	NA
UHGV-0082357_5	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0082357_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082357_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0082357_6	Structural annotation	PF10743, NF040990	NA	NA
UHGV-0082357_7	PHROG	phrog_32342	NA	unknown function
UHGV-0082357_8	eggNOG-mapper	742765.HMPREF9457_02102	NA	NA
UHGV-0082357_10	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0082357_10	PHROG	phrog_1499	NA	unknown function
UHGV-0082357_10	UniRef90	UniRef90_R6SEG3	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-0082357_10	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0082357_10	PADLOC	AAA_15	NA	NA
UHGV-0082357_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-0082357_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0082357_10	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0082357_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0082357_11	UniRef90	UniRef90_UPI001E57C8F5	ATP-binding protein	NA
UHGV-0082357_11	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0082357_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0082357_11	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0082357_12	PHROG	phrog_2698	NA	unknown function
UHGV-0082357_12	UniRef90	UniRef90_D9R8Z5	NA	NA
UHGV-0082357_12	eggNOG-mapper	411462.DORLON_00810	NA	NA
UHGV-0082357_12	Structural annotation	PF05037	NA	NA
UHGV-0082357_13	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0082357_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0082357_13	UniRef90	UniRef90_R6SHV8	Helicase C-terminal domain protein	NA
UHGV-0082357_13	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0082357_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0082357_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0082357_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0082357_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0082357_13	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0082357_14	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0082357_14	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0082357_14	UniRef90	UniRef90_A6BET8	Primase C terminal 2 (PriCT-2)	NA
UHGV-0082357_14	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0082357_14	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0082357_14	Pfam	PF13481	AAA domain	AAA_25
UHGV-0082357_14	COG	COG3598	RecA-family ATPase	NA
UHGV-0082357_14	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0082357_15	PHROG	phrog_16687	NA	unknown function
UHGV-0082357_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0082357_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0082357_16	UniRef90	UniRef90_A6BET6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0082357_16	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0082357_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0082357_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0082357_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0082357_17	eggNOG-mapper	411462.DORLON_00805	NA	NA
UHGV-0082357_18	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0082357_19	PHROG	phrog_26445	NA	unknown function
UHGV-0082357_19	UniRef90	UniRef90_A0A412MF67	DNA-binding response regulator	NA
UHGV-0082357_19	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0082357_19	Structural annotation	PF00196	NA	NA
UHGV-0082357_22	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0082357_22	UniRef90	UniRef90_UPI0004115370	methyltransferase	NA
UHGV-0082357_22	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0082357_22	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0082357_22	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0082357_22	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0082357_22	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0082357_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0082357_24	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0082357_24	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0082357_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0082357_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0082357_24	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0082357_25	PHROG	phrog_2412	NA	unknown function
UHGV-0082357_25	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0082357_25	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0082357_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0082357_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0082357_26	UniRef90	UniRef90_A0A3R6UPU9	PBSX family phage terminase large subunit	NA
UHGV-0082357_26	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0082357_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0082357_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0082357_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0082357_26	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0082357_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0082357_27	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0082357_27	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0082357_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0082357_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0082357_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0082357_28	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0082357_28	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0082357_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0082357_28	COG	COG2369	NA	NA
UHGV-0082357_28	Structural annotation	PF06152	NA	NA
UHGV-0082357_29	PHROG	phrog_34144	NA	unknown function
UHGV-0082357_29	eggNOG-mapper	936596.HMPREF1495_0343	NA	NA
UHGV-0082357_29	Structural annotation	PF20111	NA	NA
UHGV-0082357_30	KOfam	K07584	NA	NA
UHGV-0082357_30	PHROG	phrog_4478	peptidase	other
UHGV-0082357_30	UniRef90	UniRef90_A0A845KIZ4	Ribosomal-processing cysteine protease Prp	NA
UHGV-0082357_30	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0082357_30	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0082357_30	COG	COG2868	NA	NA
UHGV-0082357_30	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0082357_31	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0082357_32	PHROG	phrog_267	major head protein	head and packaging
UHGV-0082357_32	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0082357_32	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0082357_32	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0082357_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0082357_33	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0082357_33	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0082357_34	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0082357_34	UniRef90	UniRef90_UPI0003FC0B4B	putative minor capsid protein	NA
UHGV-0082357_34	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0082357_34	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0082357_34	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0082357_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0082357_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0082357_35	UniRef90	UniRef90_UPI001915D4D5	minor capsid protein	NA
UHGV-0082357_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0082357_35	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0082357_36	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0082357_36	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0082357_36	Structural annotation	PF12691	NA	NA
UHGV-0082357_37	PHROG	phrog_820	major tail protein	tail
UHGV-0082357_37	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0082357_37	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0082357_37	COG	COG5492	NA	NA
UHGV-0082357_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0082357_38	Structural annotation	PF10666	NA	NA
UHGV-0082357_39	PHROG	phrog_706	NA	unknown function
UHGV-0082357_39	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0082357_39	eggNOG-mapper	1229517.AMFD01000018_gene176	Bacteriophage Gp15 protein	NA
UHGV-0082357_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0082357_39	Structural annotation	PF06854	NA	NA