UHGV-0082382

Genome information

Genome length 25,838 bps

CDS count 40

Completeness 64.89% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082382
vOTU ID	vOTU-040051
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_159712
BioSample	SAMEA3136729
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.39
Jumbo phage	No

Genome content
Genome length	25,838 bps
GC content	47.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.53%
Average CDS length	601.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082382_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0082382_1	UniRef90	UniRef90_UPI000A26C9C4	P27 family phage terminase small subunit	NA
UHGV-0082382_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0082382_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0082382_2	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0082382_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0082382_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0082382_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0082382_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0082382_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0082382_3	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0082382_3	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0082382_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0082382_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0082382_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0082382_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0082382_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0082382_4	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0082382_4	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0082382_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0082382_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0082382_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0082382_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0082382_5	UniRef90	UniRef90_A0A1Y4BVI1	Phage major capsid protein	NA
UHGV-0082382_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0082382_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0082382_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0082382_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0082382_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082382_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0082382_6	PHROG	phrog_749	NA	unknown function
UHGV-0082382_6	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0082382_6	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0082382_7	PHROG	phrog_19734	NA	unknown function
UHGV-0082382_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0082382_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0082382_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0082382_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0082382_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0082382_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0082382_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0082382_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0082382_9	Structural annotation	TIGR01725	NA	NA
UHGV-0082382_10	PHROG	phrog_88	major tail protein	tail
UHGV-0082382_10	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0082382_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0082382_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0082382_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0082382_12	eggNOG-mapper	1034347.CAHJ01000045_gene556	NA	NA
UHGV-0082382_12	Structural annotation	PF11836	NA	NA
UHGV-0082382_14	eggNOG-mapper	537013.CLOSTMETH_02705	NA	NA
UHGV-0082382_15	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0082382_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0082382_15	UniRef90	UniRef90_R9L0T3	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0082382_15	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0082382_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0082382_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0082382_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0082382_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0082382_16	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0082382_16	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0082382_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0082382_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0082382_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0082382_17	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0082382_17	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-0082382_17	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0082382_17	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0082382_17	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0082382_17	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0082382_17	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-0082382_19	PHROG	phrog_2310	NA	unknown function
UHGV-0082382_19	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0082382_20	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0082382_20	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0082382_20	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0082382_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0082382_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0082382_20	COG	COG4926	Phage-related protein	NA
UHGV-0082382_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0082382_21	PHROG	phrog_937	hemolysin	other
UHGV-0082382_21	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0082382_23	PHROG	phrog_13890	NA	unknown function
UHGV-0082382_23	UniRef90	UniRef90_A0A3A8Z2N2	ABC transporter ATP-binding protein	NA
UHGV-0082382_23	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0082382_25	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0082382_25	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0082382_25	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-0082382_25	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-0082382_25	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0082382_25	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0082382_25	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0082382_26	PHROG	phrog_36029	NA	unknown function
UHGV-0082382_26	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0082382_26	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0082382_27	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0082382_27	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0082382_27	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0082382_27	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0082382_29	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0082382_29	PHROG	phrog_8036	NA	unknown function
UHGV-0082382_29	UniRef90	UniRef90_R5A7E7	Bro-N domain-containing protein	NA
UHGV-0082382_29	eggNOG-mapper	1280698.AUJS01000099_gene163	BRO family, N-terminal domain	NA
UHGV-0082382_29	AcrCatalog	cluster_17589	NA	NA
UHGV-0082382_29	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0082382_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0082382_29	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0082382_29	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0082382_29	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0082382_30	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0082382_30	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0082382_30	UniRef90	UniRef90_A0A350TVK1	XRE family transcriptional regulator	NA
UHGV-0082382_30	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0082382_30	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0082382_30	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0082382_30	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0082382_31	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0082382_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0082382_32	KOfam	K03627	MBF1; putative transcription factor	NA
UHGV-0082382_32	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0082382_32	UniRef90	UniRef90_A0A350TVK0	XRE family transcriptional regulator	NA
UHGV-0082382_32	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0082382_32	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0082382_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082382_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082382_32	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0082382_33	Structural annotation	PF20385	NA	NA
UHGV-0082382_36	Structural annotation	PF06257, COG4466	NA	NA