UHGV-0082398

Genome information

Genome length 12,573 bps

CDS count 17

Completeness 90.81% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082398
vOTU ID	vOTU-014738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151048
BioSample	SAMEA2784508
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.22
Jumbo phage	No

Genome content
Genome length	12,573 bps
GC content	55.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	90.94%
Average CDS length	687.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082398_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0082398_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0082398_1	UniRef90	UniRef90_UPI00195C7236	HNH endonuclease	NA
UHGV-0082398_1	eggNOG-mapper	397290.C810_00416	HNH endonuclease	NA
UHGV-0082398_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0082398_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0082398_2	UniRef90	UniRef90_A0A0V8JHQ1	DNA packaging protein	NA
UHGV-0082398_2	eggNOG-mapper	1089548.KI783301_gene3223	NA	NA
UHGV-0082398_2	AcrCatalog	cluster_178303	NA	NA
UHGV-0082398_2	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0082398_2	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0082398_2	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0082398_3	PHROG	phrog_10	major head protein	head and packaging
UHGV-0082398_3	UniRef90	UniRef90_A0A353BS62	Phage major capsid protein	NA
UHGV-0082398_3	eggNOG-mapper	1297617.JPJD01000009_gene2879	Phage capsid family	NA
UHGV-0082398_3	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0082398_3	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0082398_3	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082398_3	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0082398_4	KOfam	K06904	NA	NA
UHGV-0082398_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0082398_4	UniRef90	UniRef90_R5EM65	HK97 family phage prohead protease	NA
UHGV-0082398_4	eggNOG-mapper	1089548.KI783301_gene3225	Caudovirus prohead serine protease	NA
UHGV-0082398_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0082398_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0082398_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0082398_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0082398_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0082398_5	UniRef90	UniRef90_UPI0018A06444	phage portal protein	NA
UHGV-0082398_5	eggNOG-mapper	1089548.KI783301_gene3227	Phage portal protein	NA
UHGV-0082398_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0082398_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0082398_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0082398_7	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0082398_7	eggNOG-mapper	1230457.C476_17702	Phage plasmid primase, P4	NA
UHGV-0082398_7	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0082398_7	Structural annotation	PF09250, COG4983	NA	NA
UHGV-0082398_8	Structural annotation	PF06504, COG5527	NA	NA
UHGV-0082398_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0082398_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0082398_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0082398_11	UniRef90	UniRef90_UPI00195E16D6	ParA family protein	NA
UHGV-0082398_11	eggNOG-mapper	525309.HMPREF0494_0329	Sporulation initiation inhibitor	NA
UHGV-0082398_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0082398_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0082398_11	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0082398_12	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0082398_12	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0082398_12	COG	COG3860	NA	NA
UHGV-0082398_14	UniRef90	UniRef90_A0A414U9B3	NA	NA
UHGV-0082398_14	eggNOG-mapper	1235794.C811_01976	NA	NA
UHGV-0082398_14	Pfam	PF12957	NA	DUF3846
UHGV-0082398_15	UniRef90	UniRef90_G9PTB7	Putative phage head-tail adaptor	NA
UHGV-0082398_15	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-0082398_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0082398_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0082398_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0082398_16	UniRef90	UniRef90_A0A5M9NUN7	Terminase large subunit	NA
UHGV-0082398_16	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0082398_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0082398_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0082398_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0082398_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0082398_17	PHROG	phrog_1066	NA	unknown function
UHGV-0082398_17	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0082398_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA