UHGV-0082441

Genome information

Genome length 25,774 bps

CDS count 38

Completeness 64.55% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082441
vOTU ID	vOTU-025363
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_149162
BioSample	SAMEA2784502
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38
Jumbo phage	No

Genome content
Genome length	25,774 bps
GC content	42.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	94.25%
Average CDS length	640.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082441_1	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0082441_2	PHROG	phrog_6361	NA	unknown function
UHGV-0082441_2	UniRef90	UniRef90_A0A417K712	SprT-like domain-containing protein	NA
UHGV-0082441_2	eggNOG-mapper	1235798.C817_02666	SprT-like family	NA
UHGV-0082441_2	Pfam	PF10263	SprT-like family	SprT-like
UHGV-0082441_2	Structural annotation	PF10263, MF_00745, NF003339, COG3091	NA	NA
UHGV-0082441_5	eggNOG-mapper	498761.HM1_0045	NA	NA
UHGV-0082441_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0082441_6	UniRef90	UniRef90_A0A1Y4J1N7	Transcriptional regulator	NA
UHGV-0082441_6	eggNOG-mapper	537007.BLAHAN_04265	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0082441_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082441_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082441_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0082441_8	PHROG	phrog_1220	head protein	head and packaging
UHGV-0082441_8	eggNOG-mapper	428125.CLOLEP_01425	COG NOG18825 non supervised orthologous group	NA
UHGV-0082441_8	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0082441_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0082441_9	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0082441_9	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0082441_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0082441_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0082441_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0082441_10	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0082441_10	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0082441_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0082441_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0082441_10	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0082441_11	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0082441_11	PHROG	phrog_5218	NA	unknown function
UHGV-0082441_11	UniRef90	UniRef90_A0A1Y4GYF9	PhageMin_Tail domain-containing protein	NA
UHGV-0082441_11	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0082441_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0082441_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0082441_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0082441_14	PHROG	phrog_88	major tail protein	tail
UHGV-0082441_14	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0082441_14	eggNOG-mapper	66692.ABC1339	phage major tail protein, phi13 family	NA
UHGV-0082441_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0082441_14	COG	COG5492	NA	NA
UHGV-0082441_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0082441_15	Structural annotation	PF05657	NA	NA
UHGV-0082441_16	Structural annotation	TIGR01725	NA	NA
UHGV-0082441_17	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0082441_17	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0082441_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0082441_18	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0082441_18	eggNOG-mapper	1536774.H70357_10640	NA	NA
UHGV-0082441_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0082441_19	UniRef90	UniRef90_A0A7C6X0D9	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-0082441_19	eggNOG-mapper	903814.ELI_3108	phage major tail protein, phi13 family	NA
UHGV-0082441_19	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0082441_19	COG	COG5492	NA	NA
UHGV-0082441_19	Structural annotation	PF18316	NA	NA
UHGV-0082441_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0082441_20	UniRef90	UniRef90_UPI00156E5E69	phage major capsid protein	NA
UHGV-0082441_20	eggNOG-mapper	1536769.P40081_01075	Phage capsid family	NA
UHGV-0082441_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0082441_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0082441_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082441_20	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0082441_21	KOfam	K06904	NA	NA
UHGV-0082441_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0082441_21	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-0082441_21	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0082441_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0082441_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0082441_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0082441_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0082441_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0082441_22	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0082441_22	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0082441_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0082441_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0082441_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0082441_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0082441_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0082441_26	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-0082441_26	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0082441_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0082441_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0082441_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0082441_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0082441_29	PHROG	phrog_1066	NA	unknown function
UHGV-0082441_30	eggNOG-mapper	478749.BRYFOR_08510	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0082441_30	COG	COG4926	Phage-related protein	NA
UHGV-0082441_31	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0082441_31	UniRef90	UniRef90_UPI00048904C4	collagen-like protein	NA
UHGV-0082441_31	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0082441_31	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0082441_32	eggNOG-mapper	1410624.JNKK01000045_gene548	NA	NA
UHGV-0082441_34	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0082441_34	UniRef90	UniRef90_A0A415G6V0	HNH endonuclease	NA
UHGV-0082441_34	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0082441_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0082441_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0082441_34	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0082441_35	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0082441_35	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0082441_35	eggNOG-mapper	1567012.A0A0A7RTH0_9VIRU	endonuclease activity	NA
UHGV-0082441_35	Structural annotation	PF07141	NA	NA
UHGV-0082441_36	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0082441_36	PHROG	phrog_435	endolysin	lysis
UHGV-0082441_36	UniRef90	UniRef90_A0A3E5EGC6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0082441_36	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0082441_36	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0082441_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0082441_36	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0082441_36	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0082441_37	PHROG	phrog_1863	NA	unknown function
UHGV-0082441_37	eggNOG-mapper	768486.EHR_09640	NA	NA
UHGV-0082441_38	PHROG	phrog_443	holin	lysis
UHGV-0082441_38	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0082441_38	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0082441_38	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0082441_38	Structural annotation	PF16945	NA	NA