UHGV-0082493

Genome information

Genome length 23,792 bps

CDS count 45

Completeness 55.76% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082493
vOTU ID	vOTU-026023
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_147942
BioSample	SAMEA2784497
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.85
Jumbo phage	No

Genome content
Genome length	23,792 bps
GC content	57.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.03%
Average CDS length	494.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082493_1	PHROG	phrog_35419	tail fiber protein	tail
UHGV-0082493_1	eggNOG-mapper	1127515.H9C0P1_9CAUD	NA	NA
UHGV-0082493_1	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0082493_2	PHROG	phrog_15239	NA	unknown function
UHGV-0082493_2	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0082493_3	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0082493_3	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0082493_3	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0082493_3	Pfam	PF13252	NA	DUF4043
UHGV-0082493_3	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0082493_3	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0082493_4	PHROG	phrog_13908	NA	unknown function
UHGV-0082493_4	UniRef90	UniRef90_A0A844DRV7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0082493_4	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0082493_5	UniRef90	UniRef90_A0A8D9PDR6	YsxB-like protein	NA
UHGV-0082493_5	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0082493_5	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0082493_6	PHROG	phrog_156	portal protein	head and packaging
UHGV-0082493_6	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0082493_6	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0082493_6	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0082493_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0082493_7	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0082493_7	UniRef90	UniRef90_A0A8D9PDR5	Large subunit terminase	NA
UHGV-0082493_7	eggNOG-mapper	1321782.HMPREF1986_00343	NA	NA
UHGV-0082493_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0082493_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0082493_7	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0082493_8	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0082493_8	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0082493_8	Structural annotation	PF13542	NA	NA
UHGV-0082493_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0082493_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082493_9	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0082493_9	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0082493_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082493_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082493_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0082493_12	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0082493_14	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0082493_15	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0082493_15	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0082493_17	PHROG	phrog_1374	NA	unknown function
UHGV-0082493_17	UniRef90	UniRef90_A0A2I6PFH1	Putative membrane protein	NA
UHGV-0082493_17	eggNOG-mapper	1519439.JPJG01000059_gene1913	NA	NA
UHGV-0082493_17	Structural annotation	TIGR04438	NA	NA
UHGV-0082493_18	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0082493_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0082493_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0082493_20	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0082493_20	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0082493_20	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0082493_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0082493_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0082493_22	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0082493_22	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0082493_22	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0082493_22	Pfam	PF06356	NA	DUF1064
UHGV-0082493_22	Structural annotation	PF06356	NA	NA
UHGV-0082493_24	PHROG	phrog_9804	NA	unknown function
UHGV-0082493_24	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0082493_24	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0082493_24	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0082493_24	Structural annotation	PF11417	NA	NA
UHGV-0082493_25	PHROG	phrog_15768	NA	unknown function
UHGV-0082493_25	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0082493_25	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0082493_25	AcrCatalog	cluster_38323	NA	NA
UHGV-0082493_25	Pfam	PF19808	NA	DUF6291
UHGV-0082493_25	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0082493_25	Structural annotation	PF19808	NA	NA
UHGV-0082493_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0082493_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0082493_27	UniRef90	UniRef90_R6GTK3	Single-stranded DNA-binding protein	NA
UHGV-0082493_27	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0082493_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0082493_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0082493_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0082493_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0082493_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0082493_28	PHROG	phrog_7566	NA	unknown function
UHGV-0082493_28	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0082493_28	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0082493_30	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0082493_30	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0082493_30	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0082493_30	Structural annotation	PF05772	NA	NA
UHGV-0082493_31	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0082493_31	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0082493_31	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0082493_31	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0082493_32	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0082493_32	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0082493_32	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0082493_32	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0082493_32	Structural annotation	PF05565	NA	NA
UHGV-0082493_34	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0082493_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082493_34	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0082493_36	PHROG	phrog_22529	NA	unknown function
UHGV-0082493_36	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0082493_36	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0082493_36	Pfam	PF06725	3D domain	3D
UHGV-0082493_36	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0082493_36	Structural annotation	COG3584	NA	NA
UHGV-0082493_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082493_39	UniRef90	UniRef90_UPI000831CB3C	helix-turn-helix domain-containing protein	NA
UHGV-0082493_39	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0082493_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082493_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082493_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0082493_40	eggNOG-mapper	55511.Q4ZE02_9CAUD	sequence-specific DNA binding	NA
UHGV-0082493_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082493_40	Structural annotation	PF01381, MF_00535, NF041951, TIGR02607, COG3655, COG3093	NA	NA
UHGV-0082493_44	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0082493_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082493_44	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0082493_45	KOfam	K14059	int; integrase	NA
UHGV-0082493_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0082493_45	UniRef90	UniRef90_U2QJL8	Site-specific recombinase, phage integrase family	NA
UHGV-0082493_45	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0082493_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0082493_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0082493_45	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA