UHGV-0082585

Genome information

Genome length 35,202 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082585
vOTU ID	vOTU-064268
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_158242
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.56
Jumbo phage	No

Genome content
Genome length	35,202 bps
GC content	55.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.72%
Average CDS length	655.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082585_1	KOfam	K14059	int; integrase	NA
UHGV-0082585_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0082585_1	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0082585_1	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0082585_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0082585_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0082585_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0082585_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0082585_2	PHROG	phrog_5978	NA	unknown function
UHGV-0082585_2	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-0082585_2	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0082585_2	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0082585_2	COG	COG3177	Fic family protein	NA
UHGV-0082585_2	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0082585_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0082585_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0082585_4	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-0082585_4	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0082585_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082585_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0082585_5	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0082585_6	Structural annotation	PF21227	NA	NA
UHGV-0082585_7	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0082585_7	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0082585_7	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-0082585_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0082585_8	PHROG	phrog_1914	NA	unknown function
UHGV-0082585_8	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0082585_8	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0082585_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0082585_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0082585_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0082585_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0082585_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082585_9	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0082585_9	eggNOG-mapper	1125712.HMPREF1316_2394	Peptidase S24-like	NA
UHGV-0082585_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0082585_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082585_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0082585_9	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0082585_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0082585_10	UniRef90	UniRef90_UPI0013ECC13D	helix-turn-helix domain-containing protein	NA
UHGV-0082585_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0082585_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082585_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0082585_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0082585_12	UniRef90	UniRef90_A0A357TPS2	DNA-binding protein	NA
UHGV-0082585_12	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0082585_12	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0082585_13	PHROG	phrog_5663	NA	unknown function
UHGV-0082585_13	UniRef90	UniRef90_UPI001EDDD6D5	NA	NA
UHGV-0082585_13	eggNOG-mapper	390235.PputW619_1358	NA	NA
UHGV-0082585_13	Pfam	PF10386	NA	DUF2441
UHGV-0082585_15	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0082585_15	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0082585_15	UniRef90	UniRef90_A0A098MBW8	AbrB family transcriptional regulator	NA
UHGV-0082585_15	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0082585_15	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0082585_15	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0082585_15	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0082585_15	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0082585_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0082585_18	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0082585_18	Structural annotation	PF21578	NA	NA
UHGV-0082585_19	KOfam	K03700	recU; recombination protein U	NA
UHGV-0082585_19	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0082585_19	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0082585_19	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0082585_19	Pfam	PF03838	Recombination protein U	RecU
UHGV-0082585_19	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0082585_19	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0082585_20	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0082585_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0082585_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0082585_21	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0082585_21	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0082585_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0082585_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0082585_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0082585_21	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0082585_22	PHROG	phrog_5781	NA	unknown function
UHGV-0082585_22	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0082585_22	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0082585_22	Pfam	PF14359	NA	DUF4406
UHGV-0082585_22	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0082585_22	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0082585_23	PHROG	phrog_3136	NA	unknown function
UHGV-0082585_23	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0082585_23	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0082585_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0082585_23	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0082585_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0082585_24	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0082585_24	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0082585_24	Pfam	PF07374	NA	DUF1492
UHGV-0082585_24	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0082585_25	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0082585_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0082585_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0082585_26	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0082585_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0082585_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0082585_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0082585_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0082585_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0082585_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0082585_26	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0082585_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0082585_27	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0082585_27	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0082585_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0082585_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0082585_28	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0082585_28	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0082585_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0082585_28	Pfam	PF21814	NA	DUF6883
UHGV-0082585_28	COG	COG2369	NA	NA
UHGV-0082585_28	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0082585_29	UniRef90	UniRef90_UPI000C08D045	NA	NA
UHGV-0082585_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0082585_30	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0082585_30	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0082585_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0082585_30	Structural annotation	PF06810	NA	NA
UHGV-0082585_31	PHROG	phrog_267	major head protein	head and packaging
UHGV-0082585_31	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0082585_31	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0082585_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0082585_32	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0082585_33	PHROG	phrog_3366	NA	unknown function
UHGV-0082585_33	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0082585_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0082585_34	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0082585_34	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0082585_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0082585_34	Structural annotation	PF11114	NA	NA
UHGV-0082585_35	PHROG	phrog_3266	tail completion	connector
UHGV-0082585_35	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0082585_35	Structural annotation	PF12691	NA	NA
UHGV-0082585_36	PHROG	phrog_3099	NA	unknown function
UHGV-0082585_36	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0082585_36	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0082585_37	PHROG	phrog_11299	NA	unknown function
UHGV-0082585_37	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0082585_37	Structural annotation	PF10666	NA	NA
UHGV-0082585_38	PHROG	phrog_706	NA	unknown function
UHGV-0082585_38	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0082585_38	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0082585_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0082585_38	Structural annotation	PF06854	NA	NA
UHGV-0082585_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0082585_39	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0082585_39	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0082585_39	COG	COG1511	NA	NA
UHGV-0082585_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0082585_41	PHROG	phrog_6616	tail protein	tail
UHGV-0082585_41	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-0082585_42	PHROG	phrog_24267	NA	unknown function
UHGV-0082585_42	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0082585_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0082585_43	PHROG	phrog_15594	NA	unknown function
UHGV-0082585_43	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0082585_43	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0082585_44	PHROG	phrog_31538	NA	unknown function
UHGV-0082585_45	PHROG	phrog_13589	NA	unknown function
UHGV-0082585_45	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0082585_46	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0082585_48	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0082585_48	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0082585_48	Structural annotation	PF18998, PF20328	NA	NA
UHGV-0082585_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0082585_49	PHROG	phrog_5182	endolysin	lysis
UHGV-0082585_49	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0082585_49	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0082585_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0082585_49	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0082585_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0082585_49	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0082585_50	PHROG	phrog_199	holin	lysis
UHGV-0082585_50	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0082585_50	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0082585_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0082585_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0082585_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0082585_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA