UHGV-0082588

Genome information

Genome length 38,897 bps

CDS count 49

Completeness 96.46% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082588
vOTU ID	vOTU-064271
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_158207
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.99
Jumbo phage	No

Genome content
Genome length	38,897 bps
GC content	39.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.18%
Average CDS length	742.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082588_1	KOfam	K14059	int; integrase	NA
UHGV-0082588_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0082588_1	UniRef90	UniRef90_R6M673	Putative integrase-phage associated	NA
UHGV-0082588_1	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0082588_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0082588_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0082588_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0082588_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0082588_2	eggNOG-mapper	537013.CLOSTMETH_00284	NA	NA
UHGV-0082588_3	PHROG	phrog_10934	NA	unknown function
UHGV-0082588_3	UniRef90	UniRef90_C5WIE2	NA	NA
UHGV-0082588_3	eggNOG-mapper	1391647.AVSV01000022_gene2581	NA	NA
UHGV-0082588_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0082588_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0082588_4	UniRef90	UniRef90_UPI0013795F20	helix-turn-helix domain-containing protein	NA
UHGV-0082588_4	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0082588_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082588_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0082588_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0082588_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0082588_5	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0082588_5	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0082588_5	Pfam	PF05339	NA	DUF739
UHGV-0082588_5	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0082588_6	PHROG	phrog_34107	NA	unknown function
UHGV-0082588_6	eggNOG-mapper	397290.C810_00389	NA	NA
UHGV-0082588_11	Structural annotation	PF10922	NA	NA
UHGV-0082588_12	Structural annotation	PF17574	NA	NA
UHGV-0082588_13	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0082588_13	PHROG	phrog_1499	NA	unknown function
UHGV-0082588_13	UniRef90	UniRef90_A0A1C6CT75	Chromosome segregation protein	NA
UHGV-0082588_13	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0082588_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0082588_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0082588_13	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0082588_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0082588_14	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0082588_14	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0082588_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0082588_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0082588_15	PHROG	phrog_2698	NA	unknown function
UHGV-0082588_15	UniRef90	UniRef90_UPI001106D01D	NA	NA
UHGV-0082588_15	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0082588_15	Structural annotation	PF05037	NA	NA
UHGV-0082588_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0082588_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0082588_16	UniRef90	UniRef90_A0A1C6CSB9	Excinuclease ABC subunit B	NA
UHGV-0082588_16	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0082588_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0082588_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0082588_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0082588_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0082588_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0082588_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0082588_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0082588_17	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-0082588_17	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-0082588_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0082588_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-0082588_17	COG	COG3598	RecA-family ATPase	NA
UHGV-0082588_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0082588_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0082588_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0082588_18	UniRef90	UniRef90_A0A1C6CSJ7	Holliday junction resolvase	NA
UHGV-0082588_18	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0082588_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0082588_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0082588_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0082588_19	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-0082588_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0082588_22	UniRef90	UniRef90_A0A7X5E5X0	Adenylyl-sulfate reductase (Fragment)	NA
UHGV-0082588_22	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0082588_22	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0082588_22	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0082588_22	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0082588_23	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0082588_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0082588_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0082588_25	UniRef90	UniRef90_A0A3M0SXP1	NA	NA
UHGV-0082588_25	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0082588_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0082588_25	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0082588_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0082588_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0082588_27	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0082588_27	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0082588_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0082588_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0082588_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0082588_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0082588_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0082588_28	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0082588_28	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0082588_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0082588_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0082588_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0082588_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0082588_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0082588_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0082588_29	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0082588_29	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0082588_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0082588_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0082588_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0082588_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0082588_30	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0082588_30	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0082588_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0082588_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0082588_30	COG	COG2369	NA	NA
UHGV-0082588_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0082588_32	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0082588_32	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0082588_32	Pfam	PF14265	NA	DUF4355
UHGV-0082588_32	Structural annotation	PF14265	NA	NA
UHGV-0082588_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0082588_33	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082588_33	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0082588_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0082588_33	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0082588_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0082588_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082588_33	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0082588_34	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0082588_34	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0082588_34	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0082588_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0082588_34	Structural annotation	PF05135	NA	NA
UHGV-0082588_35	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0082588_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0082588_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0082588_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0082588_36	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0082588_36	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0082588_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0082588_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0082588_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0082588_37	PHROG	phrog_78	tail terminator	connector
UHGV-0082588_37	Structural annotation	PF05657	NA	NA
UHGV-0082588_38	PHROG	phrog_88	major tail protein	tail
UHGV-0082588_38	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0082588_38	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-0082588_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0082588_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0082588_40	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0082588_40	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0082588_40	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0082588_40	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0082588_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0082588_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0082588_40	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0082588_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0082588_41	UniRef90	UniRef90_R6MKV6	Phage-related protein	NA
UHGV-0082588_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0082588_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0082588_41	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0082588_42	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0082588_42	UniRef90	UniRef90_R6MQW9	Phage minor structural protein	NA
UHGV-0082588_42	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-0082588_42	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0082588_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0082588_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0082588_42	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0082588_42	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0082588_43	UniRef90	UniRef90_A0A316P9E8	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-0082588_43	eggNOG-mapper	1408422.JHYF01000017_gene1892	NA	NA
UHGV-0082588_43	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0082588_45	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0082588_45	Structural annotation	TIGR03808	NA	NA
UHGV-0082588_47	PHROG	phrog_937	hemolysin	other
UHGV-0082588_48	PHROG	phrog_443	holin	lysis
UHGV-0082588_48	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0082588_48	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0082588_48	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0082588_48	Structural annotation	PF16945	NA	NA
UHGV-0082588_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0082588_49	PHROG	phrog_670	endolysin	lysis
UHGV-0082588_49	UniRef90	UniRef90_A0A1C6BSR2	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0082588_49	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0082588_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0082588_49	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA