UHGV-0082654

Genome information

Genome length 33,712 bps

CDS count 45

Completeness 79.81% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082654
vOTU ID	vOTU-029673
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167972
BioSample	SAMEA3136632
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.88
Jumbo phage	No

Genome content
Genome length	33,712 bps
GC content	41.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.36%
Average CDS length	704.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082654_1	KOfam	K14059	int; integrase	NA
UHGV-0082654_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0082654_1	UniRef90	UniRef90_A0A1I0JMR0	Integrase	NA
UHGV-0082654_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0082654_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0082654_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0082654_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0082654_2	PHROG	phrog_9605	NA	unknown function
UHGV-0082654_2	UniRef90	UniRef90_UPI0011DDF8A9	NA	NA
UHGV-0082654_2	eggNOG-mapper	1410628.JNKS01000004_gene2023	NA	NA
UHGV-0082654_2	Pfam	PF12358	NA	DUF3644
UHGV-0082654_2	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-0082654_2	Structural annotation	PF12358, COG1895	NA	NA
UHGV-0082654_3	PHROG	phrog_87	metallo-protease	other
UHGV-0082654_3	UniRef90	UniRef90_A0A564SD80	Peptidase_M78 domain-containing protein	NA
UHGV-0082654_3	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0082654_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0082654_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0082654_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0082654_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082654_4	UniRef90	UniRef90_UPI000CF907E9	helix-turn-helix domain-containing protein	NA
UHGV-0082654_4	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-0082654_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082654_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082654_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0082654_5	UniRef90	UniRef90_A0A6N9LK73	XRE family transcriptional regulator	NA
UHGV-0082654_5	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0082654_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082654_5	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0082654_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0082654_8	PHROG	phrog_4292	NA	unknown function
UHGV-0082654_10	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0082654_10	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0082654_10	UniRef90	UniRef90_A0A3D3U8P6	NA	NA
UHGV-0082654_10	eggNOG-mapper	1122201.AUAZ01000055_gene153	NA	NA
UHGV-0082654_10	Pfam	PF12684	NA	DUF3799
UHGV-0082654_10	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0082654_11	PHROG	phrog_21613	NA	unknown function
UHGV-0082654_11	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0082654_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0082654_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0082654_12	UniRef90	UniRef90_A0A3D3U8Y9	Single-stranded DNA-binding protein	NA
UHGV-0082654_12	eggNOG-mapper	887325.HMPREF0381_0372	Single-stranded DNA-binding protein	NA
UHGV-0082654_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0082654_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0082654_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0082654_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0082654_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0082654_13	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0082654_13	UniRef90	UniRef90_A0A3D3U9X5	ERCC4 domain-containing protein	NA
UHGV-0082654_13	eggNOG-mapper	861454.HMPREF9099_00350	ERCC4 domain	NA
UHGV-0082654_13	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0082654_13	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0082654_14	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0082654_14	PHROG	phrog_11992	NA	unknown function
UHGV-0082654_14	UniRef90	UniRef90_A0A3D3U8V0	DNA primase	NA
UHGV-0082654_14	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0082654_14	PADLOC	drt-UG29	DRT	DRT
UHGV-0082654_14	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0082654_14	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0082654_14	Structural annotation	PF01807	NA	NA
UHGV-0082654_15	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0082654_15	UniRef90	UniRef90_UPI001D0E7B86	NA	NA
UHGV-0082654_15	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0082654_15	Pfam	PF06048	NA	DUF927
UHGV-0082654_15	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0082654_15	COG	COG5519	NA	NA
UHGV-0082654_15	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0082654_18	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0082654_20	UniRef90	UniRef90_A0A1C5TF07	NA	NA
UHGV-0082654_20	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-0082654_20	Pfam	PF04448	NA	DUF551
UHGV-0082654_20	Structural annotation	NF041588	NA	NA
UHGV-0082654_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0082654_22	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0082654_22	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0082654_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0082654_22	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0082654_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0082654_24	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0082654_24	UniRef90	UniRef90_A0A415YC75	Phage portal protein	NA
UHGV-0082654_24	eggNOG-mapper	1235799.C818_04216	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0082654_24	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0082654_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0082654_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0082654_24	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0082654_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0082654_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0082654_25	UniRef90	UniRef90_UPI0018985A97	PBSX family phage terminase large subunit	NA
UHGV-0082654_25	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0082654_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0082654_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0082654_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0082654_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0082654_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0082654_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0082654_26	UniRef90	UniRef90_UPI001897501E	phage portal protein	NA
UHGV-0082654_26	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0082654_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0082654_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0082654_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0082654_27	UniRef90	UniRef90_A0A3D3U8R6	Minor capsid protein	NA
UHGV-0082654_27	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0082654_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0082654_27	COG	COG2369	NA	NA
UHGV-0082654_27	Structural annotation	PF06152	NA	NA
UHGV-0082654_28	PHROG	phrog_15041	NA	unknown function
UHGV-0082654_28	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0082654_28	Structural annotation	PF10827	NA	NA
UHGV-0082654_29	KOfam	K07584	NA	NA
UHGV-0082654_29	PHROG	phrog_4478	peptidase	other
UHGV-0082654_29	UniRef90	UniRef90_UPI00156D7F8B	ribosomal-processing cysteine protease Prp	NA
UHGV-0082654_29	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0082654_29	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0082654_29	COG	COG2868	NA	NA
UHGV-0082654_29	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0082654_30	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0082654_30	eggNOG-mapper	411462.DORLON_00787	NA	NA
UHGV-0082654_30	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0082654_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0082654_31	UniRef90	UniRef90_UPI00157128C8	phage major capsid protein	NA
UHGV-0082654_31	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0082654_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0082654_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0082654_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082654_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0082654_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0082654_32	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0082654_33	PHROG	phrog_3366	NA	unknown function
UHGV-0082654_33	Pfam	PF20536	NA	DUF6751
UHGV-0082654_33	Structural annotation	PF20536	NA	NA
UHGV-0082654_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0082654_34	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0082654_34	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0082654_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0082654_34	Structural annotation	PF11114	NA	NA
UHGV-0082654_35	PHROG	phrog_3266	tail completion	connector
UHGV-0082654_35	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0082654_35	Structural annotation	PF12691	NA	NA
UHGV-0082654_36	PHROG	phrog_3099	NA	unknown function
UHGV-0082654_36	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0082654_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0082654_37	PHROG	phrog_11299	NA	unknown function
UHGV-0082654_37	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0082654_37	Structural annotation	PF10666	NA	NA
UHGV-0082654_38	PHROG	phrog_706	NA	unknown function
UHGV-0082654_38	UniRef90	UniRef90_A0A1C5M8I2	Bacteriophage Gp15 protein	NA
UHGV-0082654_38	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0082654_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0082654_38	Structural annotation	PF06854	NA	NA
UHGV-0082654_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0082654_39	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0082654_39	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0082654_39	COG	COG5412	Phage-related protein	NA
UHGV-0082654_40	PHROG	phrog_1194	NA	unknown function
UHGV-0082654_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0082654_41	PHROG	phrog_6616	tail protein	tail
UHGV-0082654_41	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0082654_41	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0082654_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0082654_41	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0082654_42	UniRef90	UniRef90_A0A3D3UB27	BppU_N domain-containing protein	NA
UHGV-0082654_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0082654_42	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0082654_44	PHROG	phrog_199	holin	lysis
UHGV-0082654_44	UniRef90	UniRef90_A0A3D3UA08	Holin	NA
UHGV-0082654_44	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0082654_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0082654_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0082654_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0082654_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0082654_45	PHROG	phrog_435	endolysin	lysis
UHGV-0082654_45	UniRef90	UniRef90_A0A416MN83	MurNAc-LAA domain-containing protein	NA
UHGV-0082654_45	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0082654_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0082654_45	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0082654_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0082654_45	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA