UHGV-0082994

Genome information

Genome length 39,265 bps

CDS count 54

Completeness 98.03% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082994
vOTU ID	vOTU-008461
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151166
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.27
Jumbo phage	No

Genome content
Genome length	39,265 bps
GC content	45.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.50%
Average CDS length	661.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082994_1	KOfam	K05685	macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]	NA
UHGV-0082994_1	UniRef90	UniRef90_A0A3D0NWJ5	Peptide ABC transporter ATP-binding protein (Fragment)	NA
UHGV-0082994_1	eggNOG-mapper	180332.JTGN01000007_gene3514	ABC transporter	NA
UHGV-0082994_1	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA
UHGV-0082994_2	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0082994_4	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0082994_4	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0082994_6	PHROG	phrog_21498	NA	unknown function
UHGV-0082994_6	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0082994_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0082994_7	PHROG	phrog_21498	NA	unknown function
UHGV-0082994_7	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0082994_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0082994_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0082994_8	PHROG	phrog_1794	amidase	lysis
UHGV-0082994_8	UniRef90	UniRef90_A0A1C6J4E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0082994_8	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0082994_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0082994_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0082994_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0082994_9	UniRef90	UniRef90_A0A8J8ME07	CopG family transcriptional regulator	NA
UHGV-0082994_9	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-0082994_10	UniRef90	UniRef90_K1U6U8	Protein phosphatase 1 regulatory subunit 14A	NA
UHGV-0082994_10	eggNOG-mapper	478749.BRYFOR_07649	NA	NA
UHGV-0082994_10	AcrCatalog	cluster_13845	NA	NA
UHGV-0082994_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0082994_11	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0082994_11	UniRef90	UniRef90_UPI0015707BA1	phage antirepressor KilAC domain-containing protein	NA
UHGV-0082994_11	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0082994_11	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0082994_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0082994_11	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0082994_11	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0082994_12	PHROG	phrog_199	holin	lysis
UHGV-0082994_12	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0082994_12	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0082994_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0082994_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0082994_12	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0082994_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0082994_13	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0082994_13	PHROG	phrog_16164	NA	unknown function
UHGV-0082994_13	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0082994_14	PHROG	phrog_18110	NA	unknown function
UHGV-0082994_14	UniRef90	UniRef90_A0A1C6DYP3	Phage minor structural protein, N-terminal region	NA
UHGV-0082994_14	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0082994_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0082994_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0082994_14	COG	COG4926	Phage-related protein	NA
UHGV-0082994_15	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0082994_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0082994_15	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0082994_16	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0082994_16	PHROG	phrog_5218	NA	unknown function
UHGV-0082994_16	UniRef90	UniRef90_A0A1C6DY47	Phage-related minor tail protein	NA
UHGV-0082994_16	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0082994_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0082994_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0082994_18	PHROG	phrog_2115	tail protein	tail
UHGV-0082994_18	Structural annotation	PF11836	NA	NA
UHGV-0082994_19	PHROG	phrog_88	major tail protein	tail
UHGV-0082994_19	UniRef90	UniRef90_A0A1C6DYZ6	Phage major tail protein, phi13 family	NA
UHGV-0082994_19	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0082994_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0082994_19	COG	COG5492	NA	NA
UHGV-0082994_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0082994_20	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0082994_20	COG	COG5492	NA	NA
UHGV-0082994_20	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0082994_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0082994_21	UniRef90	UniRef90_A0A1C6DYP9	Phage protein, HK97 gp10 family	NA
UHGV-0082994_21	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0082994_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0082994_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0082994_21	Structural annotation	TIGR01725	NA	NA
UHGV-0082994_22	PHROG	phrog_19734	NA	unknown function
UHGV-0082994_22	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0082994_22	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-0082994_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0082994_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0082994_23	PHROG	phrog_749	NA	unknown function
UHGV-0082994_23	UniRef90	UniRef90_UPI001C0F1EE0	head-tail connector protein	NA
UHGV-0082994_23	eggNOG-mapper	1347392.CCEZ01000045_gene14	NA	NA
UHGV-0082994_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0082994_24	UniRef90	UniRef90_A0A1C6DZ71	Phage major capsid protein, HK97 family	NA
UHGV-0082994_24	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0082994_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0082994_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0082994_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082994_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0082994_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0082994_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0082994_25	UniRef90	UniRef90_A0A1C6DZF0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0082994_25	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0082994_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0082994_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0082994_25	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0082994_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0082994_26	UniRef90	UniRef90_A0A1C6E0D8	Phage portal protein, HK97 family	NA
UHGV-0082994_26	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0082994_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0082994_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0082994_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0082994_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0082994_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0082994_27	UniRef90	UniRef90_A0A1C6DZH3	Phage terminase-like protein, large subunit	NA
UHGV-0082994_27	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0082994_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0082994_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0082994_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0082994_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0082994_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0082994_29	UniRef90	UniRef90_A0A1C6DZR4	HNH endonuclease	NA
UHGV-0082994_29	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0082994_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0082994_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0082994_29	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0082994_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0082994_30	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0082994_30	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0082994_30	Pfam	PF07374	NA	DUF1492
UHGV-0082994_30	Structural annotation	PF04545	NA	NA
UHGV-0082994_32	PHROG	phrog_9958	NA	unknown function
UHGV-0082994_32	UniRef90	UniRef90_A0A412ELZ1	NA	NA
UHGV-0082994_32	Pfam	PF19789	NA	DUF6273
UHGV-0082994_32	Structural annotation	PF19789	NA	NA
UHGV-0082994_34	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-0082994_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0082994_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0082994_36	UniRef90	UniRef90_A0A1C6E0P5	Single-stranded DNA-binding protein	NA
UHGV-0082994_36	eggNOG-mapper	411459.RUMOBE_01742	NA	NA
UHGV-0082994_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0082994_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0082994_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0082994_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0082994_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0082994_38	PHROG	phrog_23707	NA	unknown function
UHGV-0082994_38	UniRef90	UniRef90_A7AY49	NA	NA
UHGV-0082994_38	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0082994_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0082994_38	Structural annotation	PF08325, COG4900	NA	NA
UHGV-0082994_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0082994_39	PHROG	phrog_15982	NA	unknown function
UHGV-0082994_39	UniRef90	UniRef90_A7AY48	ParB domain-containing protein	NA
UHGV-0082994_39	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0082994_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0082994_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0082994_39	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0082994_40	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0082994_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0082994_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0082994_41	UniRef90	UniRef90_A0A1Q6KU49	AAA_31 domain-containing protein	NA
UHGV-0082994_41	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0082994_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-0082994_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0082994_41	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0082994_42	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0082994_43	PHROG	phrog_824	NA	unknown function
UHGV-0082994_43	UniRef90	UniRef90_A0A414DFB5	VRR-NUC domain-containing protein	NA
UHGV-0082994_43	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0082994_43	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0082994_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0082994_45	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0082994_45	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0082994_45	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0082994_47	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0082994_47	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0082994_47	UniRef90	UniRef90_A0A414DFI8	Cytosine-specific methyltransferase	NA
UHGV-0082994_47	eggNOG-mapper	742741.HMPREF9475_00411	C-5 cytosine-specific DNA methylase	NA
UHGV-0082994_47	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0082994_47	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0082994_47	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0082994_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0082994_47	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0082994_48	eggNOG-mapper	411470.RUMGNA_00195	NA	NA
UHGV-0082994_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0082994_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082994_50	UniRef90	UniRef90_A0A412EM95	XRE family transcriptional regulator	NA
UHGV-0082994_50	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0082994_50	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0082994_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082994_50	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0082994_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0082994_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082994_51	UniRef90	UniRef90_A0A412EM95	XRE family transcriptional regulator	NA
UHGV-0082994_51	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0082994_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082994_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082994_51	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0082994_52	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0082994_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082994_52	UniRef90	UniRef90_A0A412ELZ3	XRE family transcriptional regulator	NA
UHGV-0082994_52	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0082994_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082994_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0082994_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0082994_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0082994_53	UniRef90	UniRef90_A0A3R6WU62	Site-specific recombinase	NA
UHGV-0082994_53	eggNOG-mapper	411470.RUMGNA_00187	Resolvase, N terminal domain	NA
UHGV-0082994_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0082994_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0082994_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0082994_53	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0082994_54	KOfam	K02003	ABC.CD.A; putative ABC transport system ATP-binding protein	NA
UHGV-0082994_54	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0082994_54	UniRef90	UniRef90_A0A1C5L8Y9	Macrolide export ATP-binding/permease protein MacB	NA
UHGV-0082994_54	eggNOG-mapper	180332.JTGN01000007_gene3514	ABC transporter	NA
UHGV-0082994_54	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0082994_54	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA
UHGV-0082994_54	Structural annotation	PF00005, MF_01005, NF008639, COG1136	NA	NA