UHGV-0083001

Genome information

Genome length 31,435 bps

CDS count 49

Completeness 96.43% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083001
vOTU ID	vOTU-060582
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151182
BioSample	SAMEA2784469
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.66
Jumbo phage	No

Genome content
Genome length	31,435 bps
GC content	38.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.76%
Average CDS length	583.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083001_1	PHROG	phrog_918	NA	unknown function
UHGV-0083001_1	UniRef90	UniRef90_UPI001E2DBFC8	NA	NA
UHGV-0083001_1	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0083001_1	Pfam	PF19791	NA	DUF6275
UHGV-0083001_1	Structural annotation	PF19791	NA	NA
UHGV-0083001_3	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083001_3	UniRef90	UniRef90_UPI0013F61821	NA	NA
UHGV-0083001_3	Pfam	PF12961	NA	DUF3850
UHGV-0083001_4	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083001_4	UniRef90	UniRef90_I2E873	HNHc domain-containing protein (Fragment)	NA
UHGV-0083001_4	eggNOG-mapper	508419.F8J1A6_9CAUD	HNH endonuclease	NA
UHGV-0083001_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0083001_5	eggNOG-mapper	1437603.BMON_0122	Putative phage holin Dp-1	NA
UHGV-0083001_5	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0083001_5	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0083001_6	PHROG	phrog_14030	NA	unknown function
UHGV-0083001_6	UniRef90	UniRef90_A0A373N0W8	Peptidoglycan-binding protein	NA
UHGV-0083001_6	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0083001_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0083001_6	Structural annotation	PF01471, COG3409	NA	NA
UHGV-0083001_7	Structural annotation	TIGR01636	NA	NA
UHGV-0083001_8	PHROG	phrog_9804	NA	unknown function
UHGV-0083001_8	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0083001_8	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0083001_8	AcrCatalog	cluster_137185	NA	NA
UHGV-0083001_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0083001_8	Structural annotation	PF11417	NA	NA
UHGV-0083001_10	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0083001_10	UniRef90	UniRef90_A0A371AZY0	Phage_rep_org_N domain-containing protein	NA
UHGV-0083001_10	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0083001_10	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0083001_10	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0083001_10	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0083001_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0083001_11	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083001_11	UniRef90	UniRef90_A0A7H4KH39	Endodeoxyribonuclease RusA	NA
UHGV-0083001_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0083001_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0083001_13	PHROG	phrog_7566	NA	unknown function
UHGV-0083001_13	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0083001_13	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0083001_14	PHROG	phrog_1389	NA	unknown function
UHGV-0083001_14	eggNOG-mapper	1280692.AUJL01000025_gene2094	NA	NA
UHGV-0083001_14	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0083001_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083001_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083001_16	UniRef90	UniRef90_A0A3A6CEI5	Single-stranded DNA-binding protein	NA
UHGV-0083001_16	eggNOG-mapper	357809.Cphy_3773	Single-stranded DNA-binding protein	NA
UHGV-0083001_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083001_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083001_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083001_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0083001_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0083001_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0083001_18	UniRef90	UniRef90_UPI0018987C03	ERF family protein	NA
UHGV-0083001_18	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0083001_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0083001_18	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0083001_20	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0083001_21	UniRef90	UniRef90_R6NGY9	HTH cro/C1-type domain-containing protein	NA
UHGV-0083001_21	eggNOG-mapper	1507.HMPREF0262_01302	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0083001_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0083001_21	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0083001_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0083001_22	PHROG	phrog_95	integrase	integration and excision
UHGV-0083001_22	UniRef90	UniRef90_UPI000C07792A	recombinase family protein	NA
UHGV-0083001_22	eggNOG-mapper	642492.Clole_2803	resolvase	NA
UHGV-0083001_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0083001_22	Pfam	PF07508	Recombinase	Recombinase
UHGV-0083001_22	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0083001_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0083001_22	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0083001_23	PHROG	phrog_372	tail protein	tail
UHGV-0083001_23	UniRef90	UniRef90_A0A4D6B7C6	Capsid and scaffold protein	NA
UHGV-0083001_23	eggNOG-mapper	764299.STRIC_2437	NA	NA
UHGV-0083001_23	Pfam	PF05895	NA	DUF859
UHGV-0083001_23	Structural annotation	PF05895, MF_04116, MF_00791, NF010681, COG3401	NA	NA
UHGV-0083001_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083001_24	UniRef90	UniRef90_UPI000166BDF8	NUMOD4 domain-containing protein	NA
UHGV-0083001_24	eggNOG-mapper	324831.LGAS_0604	NUMOD1 domain	NA
UHGV-0083001_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0083001_24	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0083001_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0083001_24	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0083001_25	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0083001_25	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-0083001_25	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0083001_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0083001_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0083001_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0083001_26	eggNOG-mapper	1280671.AUJH01000012_gene3136	NA	NA
UHGV-0083001_27	PHROG	phrog_11541	NA	unknown function
UHGV-0083001_27	UniRef90	UniRef90_A0A173V0S4	SGNH_hydro domain-containing protein	NA
UHGV-0083001_27	eggNOG-mapper	877415.JNJQ01000011_gene667	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0083001_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083001_29	PHROG	phrog_1084	NA	unknown function
UHGV-0083001_29	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-0083001_29	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0083001_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0083001_30	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0083001_30	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0083001_30	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0083001_30	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0083001_31	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0083001_31	UniRef90	UniRef90_A0A6N8JML2	Phage tail tape measure protein	NA
UHGV-0083001_31	eggNOG-mapper	537007.BLAHAN_04244	Phage tail tape measure protein, TP901 family	NA
UHGV-0083001_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0083001_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0083001_31	COG	COG5283	Phage-related tail protein	NA
UHGV-0083001_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0083001_32	PHROG	phrog_2115	tail protein	tail
UHGV-0083001_32	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0083001_32	Structural annotation	PF11836	NA	NA
UHGV-0083001_33	PHROG	phrog_88	major tail protein	tail
UHGV-0083001_33	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0083001_33	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0083001_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0083001_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0083001_34	PHROG	phrog_78	tail terminator	connector
UHGV-0083001_34	eggNOG-mapper	508419.F8J167_9CAUD	NA	NA
UHGV-0083001_34	Structural annotation	PF05657	NA	NA
UHGV-0083001_35	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0083001_35	eggNOG-mapper	1399942.U3PIW3_9CAUD	NA	NA
UHGV-0083001_35	Structural annotation	TIGR01725	NA	NA
UHGV-0083001_36	PHROG	phrog_25	head closure Hc1	connector
UHGV-0083001_36	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0083001_36	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0083001_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0083001_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0083001_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083001_37	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0083001_37	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0083001_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0083001_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0083001_38	PHROG	phrog_6865	NA	unknown function
UHGV-0083001_38	Structural annotation	PF01281	NA	NA
UHGV-0083001_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083001_40	UniRef90	UniRef90_A0A843HQ06	Phage major capsid protein	NA
UHGV-0083001_40	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-0083001_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083001_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083001_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083001_41	KOfam	K06904	NA	NA
UHGV-0083001_41	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0083001_41	UniRef90	UniRef90_A0A843HVM4	HK97 family phage prohead protease	NA
UHGV-0083001_41	eggNOG-mapper	508419.F8J161_9CAUD	peptidase activity	NA
UHGV-0083001_41	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0083001_41	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0083001_41	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0083001_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083001_42	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-0083001_42	eggNOG-mapper	508419.F8J160_9CAUD	Phage portal protein	NA
UHGV-0083001_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083001_42	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083001_42	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0083001_43	UniRef90	UniRef90_W1I7V7	Uncultured bacterium plasmid pRGF00143	NA
UHGV-0083001_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083001_48	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0083001_48	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-0083001_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083001_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083001_48	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0083001_49	PHROG	phrog_13845	NA	unknown function
UHGV-0083001_49	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0083001_49	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA