UHGV-0083008

Genome information

Genome length 39,809 bps

CDS count 65

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083008
vOTU ID	vOTU-045195
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_144906
BioSample	SAMEA2737860
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.73
Jumbo phage	No

Genome content
Genome length	39,809 bps
GC content	50.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	89.41%
Average CDS length	550.99 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083008_1	PHROG	phrog_5070	NA	unknown function
UHGV-0083008_1	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0083008_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0083008_3	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0083008_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0083008_3	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0083008_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083008_4	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0083008_4	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0083008_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083008_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083008_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0083008_6	UniRef90	UniRef90_UPI001F46B012	SAP domain-containing protein	NA
UHGV-0083008_6	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0083008_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083008_8	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0083008_9	KOfam	K14059	int; integrase	NA
UHGV-0083008_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0083008_9	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0083008_9	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0083008_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083008_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083008_9	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0083008_11	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0083008_12	Structural annotation	PF12510	NA	NA
UHGV-0083008_13	PHROG	phrog_20016	NA	unknown function
UHGV-0083008_13	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0083008_13	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0083008_14	PHROG	phrog_16490	NA	unknown function
UHGV-0083008_14	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0083008_15	PHROG	phrog_22984	NA	unknown function
UHGV-0083008_16	PHROG	phrog_21718	NA	unknown function
UHGV-0083008_16	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0083008_17	PHROG	phrog_3754	NA	unknown function
UHGV-0083008_17	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0083008_19	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-0083008_19	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-0083008_20	KOfam	K07692	degU; two-component system, NarL family, response regulator DegU	NA
UHGV-0083008_20	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0083008_20	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0083008_21	PHROG	phrog_13256	NA	unknown function
UHGV-0083008_21	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0083008_22	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0083008_22	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0083008_23	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0083008_23	PHROG	phrog_7698	endolysin	lysis
UHGV-0083008_23	UniRef90	UniRef90_A0A1C5V282	Exo-glucosaminidase lytG	NA
UHGV-0083008_23	eggNOG-mapper	877414.ATWA01000019_gene2055	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0083008_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0083008_23	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0083008_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083008_23	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0083008_25	Structural annotation	PF10651	NA	NA
UHGV-0083008_26	PHROG	phrog_9534	head protein	head and packaging
UHGV-0083008_26	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0083008_26	Structural annotation	PF21567	NA	NA
UHGV-0083008_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0083008_27	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0083008_27	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0083008_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0083008_27	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0083008_28	PHROG	phrog_36410	NA	unknown function
UHGV-0083008_28	UniRef90	UniRef90_A0A160INM5	Phage tail protein	NA
UHGV-0083008_28	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0083008_28	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0083008_29	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0083008_29	eggNOG-mapper	545697.HMPREF0216_02861	tail tape measure protein	NA
UHGV-0083008_29	COG	COG5283	Phage-related tail protein	NA
UHGV-0083008_30	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0083008_30	UniRef90	UniRef90_A0A1B1IM37	Putative tape measure protein	NA
UHGV-0083008_30	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-0083008_30	COG	COG5283	Phage-related tail protein	NA
UHGV-0083008_30	Structural annotation	PF20155	NA	NA
UHGV-0083008_31	PHROG	phrog_20920	NA	unknown function
UHGV-0083008_31	UniRef90	UniRef90_S6B1J4	Small-conductance mechanosensitive channel	NA
UHGV-0083008_31	eggNOG-mapper	1536770.R50345_22870	NA	NA
UHGV-0083008_31	Structural annotation	PF16674	NA	NA
UHGV-0083008_32	PHROG	phrog_18646	NA	unknown function
UHGV-0083008_33	PHROG	phrog_885	major tail protein	tail
UHGV-0083008_33	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0083008_33	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0083008_33	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0083008_34	PHROG	phrog_17405	head protein	head and packaging
UHGV-0083008_34	Structural annotation	PF11367	NA	NA
UHGV-0083008_35	PHROG	phrog_17977	NA	unknown function
UHGV-0083008_35	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0083008_35	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0083008_37	PHROG	phrog_544	major head protein	head and packaging
UHGV-0083008_37	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0083008_37	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0083008_37	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0083008_37	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0083008_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0083008_38	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0083008_38	Structural annotation	PF06810	NA	NA
UHGV-0083008_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083008_39	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0083008_39	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0083008_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0083008_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0083008_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0083008_40	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0083008_40	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0083008_40	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0083008_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0083008_40	COG	COG2369	NA	NA
UHGV-0083008_40	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0083008_42	PHROG	phrog_8680	NA	unknown function
UHGV-0083008_42	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0083008_42	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0083008_42	Pfam	PF14386	NA	DUF4417
UHGV-0083008_42	Structural annotation	PF14386	NA	NA
UHGV-0083008_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0083008_44	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0083008_44	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0083008_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083008_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0083008_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083008_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0083008_45	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0083008_45	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0083008_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0083008_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0083008_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0083008_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083008_45	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0083008_46	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0083008_46	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0083008_46	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0083008_46	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0083008_46	Structural annotation	PF16677	NA	NA
UHGV-0083008_47	PHROG	phrog_11237	NA	unknown function
UHGV-0083008_47	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0083008_47	Structural annotation	NF009167	NA	NA
UHGV-0083008_50	PHROG	phrog_7704	NA	unknown function
UHGV-0083008_50	UniRef90	UniRef90_A0A8J6P6R9	NA	NA
UHGV-0083008_50	Pfam	PF04448	NA	DUF551
UHGV-0083008_50	Structural annotation	NF041588	NA	NA
UHGV-0083008_51	PHROG	phrog_9958	NA	unknown function
UHGV-0083008_51	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0083008_51	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0083008_51	Structural annotation	PF19789	NA	NA
UHGV-0083008_54	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0083008_54	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083008_54	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0083008_54	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0083008_54	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0083008_54	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0083008_54	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0083008_55	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0083008_55	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0083008_55	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0083008_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0083008_55	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0083008_58	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0083008_58	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0083008_58	UniRef90	UniRef90_A0A1Q6KAY0	SF4 helicase domain-containing protein	NA
UHGV-0083008_58	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0083008_58	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0083008_58	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0083008_58	COG	COG0305	Replicative DNA helicase	NA
UHGV-0083008_58	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0083008_59	PHROG	phrog_15768	NA	unknown function
UHGV-0083008_59	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0083008_59	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0083008_60	PHROG	phrog_4973	NA	unknown function
UHGV-0083008_60	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0083008_60	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0083008_60	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0083008_60	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0083008_61	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083008_61	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083008_61	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0083008_61	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0083008_61	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083008_61	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083008_61	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083008_61	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0083008_61	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0083008_62	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083008_62	UniRef90	UniRef90_A0A7V6VUR0	NA	NA
UHGV-0083008_62	eggNOG-mapper	861454.HMPREF9099_00347	NA	NA
UHGV-0083008_62	Pfam	PF12684	NA	DUF3799
UHGV-0083008_62	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0083008_62	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0083008_63	PHROG	phrog_21613	NA	unknown function
UHGV-0083008_63	eggNOG-mapper	1300143.CCAV010000006_gene4343	NA	NA
UHGV-0083008_65	PHROG	phrog_7964	NA	unknown function
UHGV-0083008_65	eggNOG-mapper	1507.HMPREF0262_01166	NA	NA
UHGV-0083008_65	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck