UHGV-0083096

Genome information

Genome length 36,788 bps

CDS count 55

Completeness 92.11% (high-quality)

geNomad score 0.9651

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083096
vOTU ID	vOTU-069538
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_147722
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9651
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.1
Jumbo phage	No

Genome content
Genome length	36,788 bps
GC content	33.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.51%
Average CDS length	628.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083096_1	PHROG	phrog_199	holin	lysis
UHGV-0083096_1	UniRef90	UniRef90_A0A348ZBJ4	Holin	NA
UHGV-0083096_1	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0083096_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0083096_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0083096_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0083096_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0083096_4	PHROG	phrog_18190	NA	unknown function
UHGV-0083096_4	UniRef90	UniRef90_UPI000F53DFF3	tail fiber domain-containing protein	NA
UHGV-0083096_4	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0083096_5	PHROG	phrog_1194	NA	unknown function
UHGV-0083096_5	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0083096_5	Pfam	PF20458	NA	DUF6711
UHGV-0083096_5	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0083096_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0083096_6	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0083096_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0083096_7	PHROG	phrog_9700	NA	unknown function
UHGV-0083096_7	UniRef90	UniRef90_UPI001B3C6D17	leucine-rich repeat protein	NA
UHGV-0083096_7	eggNOG-mapper	476272.RUMHYD_01979	NA	NA
UHGV-0083096_7	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0083096_7	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0083096_8	PHROG	phrog_706	NA	unknown function
UHGV-0083096_8	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0083096_8	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0083096_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0083096_8	Structural annotation	PF06854	NA	NA
UHGV-0083096_9	PHROG	phrog_11299	NA	unknown function
UHGV-0083096_9	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0083096_9	Structural annotation	PF10666	NA	NA
UHGV-0083096_10	PHROG	phrog_3099	NA	unknown function
UHGV-0083096_10	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0083096_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0083096_11	PHROG	phrog_3266	tail completion	connector
UHGV-0083096_11	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0083096_11	Structural annotation	PF20765	NA	NA
UHGV-0083096_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0083096_12	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0083096_12	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0083096_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0083096_12	Structural annotation	PF11114	NA	NA
UHGV-0083096_13	PHROG	phrog_3366	NA	unknown function
UHGV-0083096_13	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0083096_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0083096_14	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0083096_14	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0083096_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0083096_15	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0083096_15	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0083096_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0083096_16	UniRef90	UniRef90_UPI001B3C6D0D	phage scaffolding protein	NA
UHGV-0083096_16	eggNOG-mapper	999413.HMPREF1094_00216	COG NOG36366 non supervised orthologous group	NA
UHGV-0083096_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0083096_16	Structural annotation	PF06810	NA	NA
UHGV-0083096_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0083096_19	UniRef90	UniRef90_UPI001B3C97A7	phage minor capsid protein	NA
UHGV-0083096_19	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0083096_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0083096_19	COG	COG2369	NA	NA
UHGV-0083096_19	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0083096_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0083096_20	UniRef90	UniRef90_UPI001B3C997D	phage capsid protein	NA
UHGV-0083096_20	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0083096_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0083096_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083096_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0083096_21	UniRef90	UniRef90_UPI001B3C8BA8	terminase family protein	NA
UHGV-0083096_21	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0083096_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0083096_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083096_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0083096_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0083096_22	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0083096_22	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0083096_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0083096_22	Structural annotation	PF07141	NA	NA
UHGV-0083096_24	PHROG	phrog_8680	NA	unknown function
UHGV-0083096_24	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-0083096_24	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0083096_24	Pfam	PF14386	NA	DUF4417
UHGV-0083096_24	Structural annotation	PF14386	NA	NA
UHGV-0083096_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083096_25	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0083096_25	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-0083096_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0083096_27	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0083096_27	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0083096_27	Structural annotation	PF09889	NA	NA
UHGV-0083096_28	Structural annotation	PF15591, MF_00667, NF000331	NA	NA
UHGV-0083096_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0083096_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083096_29	UniRef90	UniRef90_UPI001B3C90F3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0083096_29	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0083096_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0083096_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0083096_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0083096_30	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0083096_30	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0083096_30	UniRef90	UniRef90_UPI001B3C4CA9	AAA family ATPase	NA
UHGV-0083096_30	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0083096_30	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0083096_30	Pfam	PF13481	AAA domain	AAA_25
UHGV-0083096_30	COG	COG3598	RecA-family ATPase	NA
UHGV-0083096_30	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0083096_31	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0083096_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0083096_31	UniRef90	UniRef90_UPI001B3C4DBD	DEAD/DEAH box helicase	NA
UHGV-0083096_31	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0083096_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0083096_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0083096_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0083096_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0083096_31	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0083096_32	PHROG	phrog_2698	NA	unknown function
UHGV-0083096_32	UniRef90	UniRef90_UPI001B3C89FE	NA	NA
UHGV-0083096_32	eggNOG-mapper	608534.GCWU000341_02311	NA	NA
UHGV-0083096_32	Structural annotation	PF05037	NA	NA
UHGV-0083096_33	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0083096_33	UniRef90	UniRef90_UPI001B3C5FE5	AAA family ATPase	NA
UHGV-0083096_33	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-0083096_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0083096_33	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0083096_34	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0083096_34	PHROG	phrog_1499	NA	unknown function
UHGV-0083096_34	UniRef90	UniRef90_UPI001B3C9718	AAA family ATPase	NA
UHGV-0083096_34	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0083096_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-0083096_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083096_34	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0083096_35	eggNOG-mapper	642492.Clole_1418	NA	NA
UHGV-0083096_40	UniRef90	UniRef90_UPI001B3C932B	helix-turn-helix domain-containing protein	NA
UHGV-0083096_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0083096_40	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0083096_41	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0083096_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0083096_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083096_48	UniRef90	UniRef90_A0A412L7W1	XRE family transcriptional regulator	NA
UHGV-0083096_48	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0083096_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083096_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0083096_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0083096_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083096_49	UniRef90	UniRef90_A0A412L7U4	XRE family transcriptional regulator	NA
UHGV-0083096_49	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0083096_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0083096_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083096_49	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0083096_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0083096_50	PHROG	phrog_87	metallo-protease	other
UHGV-0083096_50	UniRef90	UniRef90_A7VVX5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0083096_50	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0083096_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0083096_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0083096_51	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-0083096_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0083096_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083096_53	UniRef90	UniRef90_UPI00164BD4EE	helix-turn-helix domain-containing protein	NA
UHGV-0083096_53	eggNOG-mapper	931626.Awo_c14370	Helix-turn-helix XRE-family like proteins	NA
UHGV-0083096_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0083096_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083096_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083096_54	UniRef90	UniRef90_A0A348ZC97	UDP-N-acetylglucosamine kinase	NA
UHGV-0083096_54	eggNOG-mapper	1408437.JNJN01000002_gene1419	zeta toxin	NA
UHGV-0083096_54	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-0083096_54	COG	COG4185	Predicted ABC-type ATPase or kinase	NA
UHGV-0083096_54	Structural annotation	PF06414, MF_00234, NF041574, COG4185	NA	NA
UHGV-0083096_55	KOfam	K14059	int; integrase	NA
UHGV-0083096_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0083096_55	UniRef90	UniRef90_UPI001B3C717A	site-specific integrase	NA
UHGV-0083096_55	eggNOG-mapper	861454.HMPREF9099_00328	Phage integrase family	NA
UHGV-0083096_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0083096_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083096_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083096_55	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA