UHGV-0083100

Genome information

Genome length 37,798 bps

CDS count 53

Completeness 88.47% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083100
vOTU ID	vOTU-033994
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_147713
BioSample	SAMEA2737713
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.64
Jumbo phage	No

Genome content
Genome length	37,798 bps
GC content	42.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.86%
Average CDS length	636.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083100_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0083100_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0083100_1	UniRef90	UniRef90_A0A415FHQ5	Recombinase family protein	NA
UHGV-0083100_1	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0083100_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0083100_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0083100_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0083100_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0083100_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0083100_2	PHROG	phrog_1847	NA	unknown function
UHGV-0083100_2	UniRef90	UniRef90_UPI00156E489C	NA	NA
UHGV-0083100_2	eggNOG-mapper	608534.GCWU000341_02322	T5orf172	NA
UHGV-0083100_2	Pfam	PF13250	NA	DUF4041
UHGV-0083100_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0083100_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083100_2	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0083100_3	PHROG	phrog_87	metallo-protease	other
UHGV-0083100_3	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0083100_3	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0083100_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0083100_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0083100_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0083100_4	PHROG	phrog_37898	NA	unknown function
UHGV-0083100_4	UniRef90	UniRef90_A0A416QWX7	NA	NA
UHGV-0083100_4	eggNOG-mapper	877414.ATWA01000082_gene1189	NA	NA
UHGV-0083100_4	Pfam	PF10387	NA	DUF2442
UHGV-0083100_4	Structural annotation	PF10387	NA	NA
UHGV-0083100_5	PHROG	phrog_14333	NA	unknown function
UHGV-0083100_5	UniRef90	UniRef90_UPI001C0F7873	NA	NA
UHGV-0083100_5	eggNOG-mapper	1124982.MSI_07850	NA	NA
UHGV-0083100_5	Pfam	PF13711	NA	DUF4160
UHGV-0083100_5	Structural annotation	PF13711	NA	NA
UHGV-0083100_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0083100_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0083100_6	UniRef90	UniRef90_A0A1G5F4H5	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083100_6	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0083100_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083100_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083100_6	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0083100_7	UniRef90	UniRef90_A0A373P458	NA	NA
UHGV-0083100_7	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0083100_7	Pfam	PF05339	NA	DUF739
UHGV-0083100_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0083100_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0083100_9	PHROG	phrog_9607	NA	unknown function
UHGV-0083100_9	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0083100_9	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0083100_14	Structural annotation	PF16826	NA	NA
UHGV-0083100_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0083100_15	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0083100_15	Structural annotation	PF01446	NA	NA
UHGV-0083100_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0083100_16	UniRef90	UniRef90_A0A564VJZ8	Ribonuclease H	NA
UHGV-0083100_16	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0083100_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0083100_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0083100_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0083100_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0083100_18	UniRef90	UniRef90_A0A1C5VK85	Sporulation initiation inhibitor protein soj	NA
UHGV-0083100_18	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0083100_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0083100_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0083100_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0083100_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0083100_19	PHROG	phrog_15077	NA	unknown function
UHGV-0083100_19	UniRef90	UniRef90_UPI00156ECBCA	ParB/RepB/Spo0J family partition protein	NA
UHGV-0083100_19	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0083100_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0083100_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0083100_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0083100_20	PHROG	phrog_7566	NA	unknown function
UHGV-0083100_20	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0083100_23	PHROG	phrog_23707	NA	unknown function
UHGV-0083100_23	UniRef90	UniRef90_A0A415FLQ6	Alanine racemase	NA
UHGV-0083100_23	eggNOG-mapper	411483.FAEPRAA2165_01889	NA	NA
UHGV-0083100_25	PHROG	phrog_6568	NA	unknown function
UHGV-0083100_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083100_26	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0083100_26	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0083100_26	Structural annotation	PF04545	NA	NA
UHGV-0083100_27	PHROG	phrog_10865	NA	unknown function
UHGV-0083100_27	eggNOG-mapper	1031288.AXAA01000022_gene1578	NA	NA
UHGV-0083100_27	Pfam	PF20505	NA	DUF6731
UHGV-0083100_27	Structural annotation	PF20505, NF001463	NA	NA
UHGV-0083100_28	eggNOG-mapper	748449.Halha_2167	NA	NA
UHGV-0083100_28	Structural annotation	PF15968	NA	NA
UHGV-0083100_29	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0083100_29	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-0083100_29	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0083100_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0083100_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0083100_29	COG	COG5484	NA	NA
UHGV-0083100_29	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0083100_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083100_30	PHROG	phrog_10250	NA	unknown function
UHGV-0083100_30	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-0083100_30	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0083100_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0083100_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0083100_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083100_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0083100_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0083100_31	UniRef90	UniRef90_A0A1G5F2B6	Phage portal protein, SPP1 family	NA
UHGV-0083100_31	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0083100_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083100_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0083100_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0083100_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0083100_32	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0083100_32	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0083100_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0083100_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0083100_32	COG	COG2369	NA	NA
UHGV-0083100_32	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0083100_35	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0083100_35	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0083100_35	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0083100_35	Pfam	PF14265	NA	DUF4355
UHGV-0083100_35	Structural annotation	PF14265	NA	NA
UHGV-0083100_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0083100_36	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0083100_36	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0083100_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0083100_37	PHROG	phrog_2724	NA	unknown function
UHGV-0083100_37	UniRef90	UniRef90_A0A1C5VLL2	Rho termination factor, N-terminal domain	NA
UHGV-0083100_37	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0083100_37	COG	COG0261	Ribosomal protein L21	NA
UHGV-0083100_37	Structural annotation	PF07498	NA	NA
UHGV-0083100_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0083100_38	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-0083100_38	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0083100_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0083100_38	Structural annotation	PF05135	NA	NA
UHGV-0083100_39	PHROG	phrog_2168	NA	unknown function
UHGV-0083100_39	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0083100_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0083100_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083100_40	UniRef90	UniRef90_A0A1G5F1L8	Phage protein, HK97 gp10 family	NA
UHGV-0083100_40	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0083100_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0083100_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0083100_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0083100_41	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0083100_41	Structural annotation	PF05657	NA	NA
UHGV-0083100_42	PHROG	phrog_158	major tail protein	tail
UHGV-0083100_42	UniRef90	UniRef90_A0A415FLM9	Phage tail protein	NA
UHGV-0083100_42	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0083100_42	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0083100_43	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-0083100_43	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0083100_43	Pfam	PF19591	NA	DUF6096
UHGV-0083100_43	Structural annotation	PF19591	NA	NA
UHGV-0083100_44	PHROG	phrog_2066	NA	unknown function
UHGV-0083100_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0083100_45	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-0083100_45	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0083100_45	COG	COG5412	Phage-related protein	NA
UHGV-0083100_46	PHROG	phrog_1194	NA	unknown function
UHGV-0083100_46	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0083100_46	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0083100_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0083100_47	PHROG	phrog_2566	NA	unknown function
UHGV-0083100_47	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0083100_48	PHROG	phrog_1401	NA	unknown function
UHGV-0083100_48	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0083100_48	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0083100_48	Structural annotation	PF07761	NA	NA
UHGV-0083100_49	PHROG	phrog_6616	tail protein	tail
UHGV-0083100_49	UniRef90	UniRef90_UPI001C10B551	tail fiber domain-containing protein	NA
UHGV-0083100_49	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0083100_49	COG	COG4926	Phage-related protein	NA
UHGV-0083100_49	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0083100_52	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0083100_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0083100_52	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-0083100_52	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0083100_52	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0083100_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083100_52	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0083100_52	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA