UHGV-0083172

Genome information

Genome length 37,441 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083172
vOTU ID	vOTU-014089
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167682
BioSample	SAMEA3178936
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.79
Jumbo phage	No

Genome content
Genome length	37,441 bps
GC content	59.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.08%
Average CDS length	609.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083172_1	eggNOG-mapper	742722.HMPREF9463_00260	NA	NA
UHGV-0083172_1	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0083172_2	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0083172_2	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0083172_2	UniRef90	UniRef90_A0A5K1IKD6	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0083172_2	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0083172_2	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0083172_2	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0083172_2	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0083172_2	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0083172_5	eggNOG-mapper	1235794.C811_01509	NA	NA
UHGV-0083172_5	Structural annotation	PF06946	NA	NA
UHGV-0083172_6	PHROG	phrog_489	endolysin	lysis
UHGV-0083172_6	UniRef90	UniRef90_A0A5K1IKE5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083172_6	eggNOG-mapper	1504822.CCNO01000015_gene628	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0083172_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0083172_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083172_6	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0083172_7	Structural annotation	PF20037	NA	NA
UHGV-0083172_8	KOfam	K07273	acm; lysozyme	NA
UHGV-0083172_8	PHROG	phrog_291	endolysin	lysis
UHGV-0083172_8	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-0083172_8	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-0083172_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0083172_8	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0083172_8	Pfam	PF01476	LysM domain	LysM
UHGV-0083172_8	COG	COG1388	LysM repeat	NA
UHGV-0083172_8	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0083172_9	UniRef90	UniRef90_A0A1Y4G4Q3	Peptidase_C39_2 domain-containing protein	NA
UHGV-0083172_9	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-0083172_9	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0083172_9	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0083172_9	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-0083172_10	PHROG	phrog_10091	holin	lysis
UHGV-0083172_10	UniRef90	UniRef90_A0A1Y4G372	Phage holin	NA
UHGV-0083172_10	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0083172_10	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0083172_10	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0083172_10	COG	COG5546	NA	NA
UHGV-0083172_10	Structural annotation	COG5546	NA	NA
UHGV-0083172_12	PHROG	phrog_18593	NA	unknown function
UHGV-0083172_12	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-0083172_12	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0083172_12	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0083172_12	Structural annotation	PF14600	NA	NA
UHGV-0083172_13	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0083172_13	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0083172_13	UniRef90	UniRef90_A0A1Y4G3H0	Reverse transcriptase domain-containing protein	NA
UHGV-0083172_13	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0083172_13	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0083172_13	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0083172_13	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0083172_13	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0083172_14	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-0083172_14	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0083172_15	UniRef90	UniRef90_A0A1Y4G3C0	NA	NA
UHGV-0083172_15	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-0083172_15	Pfam	PF19789	NA	DUF6273
UHGV-0083172_15	Structural annotation	PF19789	NA	NA
UHGV-0083172_16	PHROG	phrog_19280	NA	unknown function
UHGV-0083172_16	UniRef90	UniRef90_A0A1Y4G926	BppU_N domain-containing protein	NA
UHGV-0083172_16	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0083172_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0083172_16	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0083172_17	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0083172_17	UniRef90	UniRef90_B6GDH3	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0083172_17	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0083172_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0083172_17	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0083172_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0083172_17	COG	COG4926	Phage-related protein	NA
UHGV-0083172_18	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0083172_18	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-0083172_18	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0083172_18	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0083172_18	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0083172_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0083172_18	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0083172_19	PHROG	phrog_23464	NA	unknown function
UHGV-0083172_19	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0083172_19	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0083172_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0083172_19	Structural annotation	COG5280	NA	NA
UHGV-0083172_21	Structural annotation	PF12363	NA	NA
UHGV-0083172_22	PHROG	phrog_88	major tail protein	tail
UHGV-0083172_22	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0083172_22	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0083172_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0083172_22	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0083172_23	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-0083172_23	Structural annotation	PF05657	NA	NA
UHGV-0083172_24	UniRef90	UniRef90_UPI00082989AC	HK97 gp10 family phage protein	NA
UHGV-0083172_24	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0083172_24	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0083172_25	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0083172_25	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-0083172_25	eggNOG-mapper	1121423.JONT01000041_gene949	head-tail adaptor	NA
UHGV-0083172_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0083172_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083172_26	PHROG	phrog_5223	neck protein	connector
UHGV-0083172_26	UniRef90	UniRef90_B6GDI1	Putative phage DNA packaging protein	NA
UHGV-0083172_26	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0083172_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0083172_26	Structural annotation	TIGR01560	NA	NA
UHGV-0083172_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083172_27	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-0083172_27	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0083172_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083172_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083172_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083172_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083172_28	KOfam	K06904	NA	NA
UHGV-0083172_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0083172_28	UniRef90	UniRef90_UPI00189D4AF0	HK97 family phage prohead protease	NA
UHGV-0083172_28	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0083172_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0083172_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0083172_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0083172_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0083172_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083172_29	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0083172_29	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0083172_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083172_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083172_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083172_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083172_30	UniRef90	UniRef90_B6GDI5	Putative phage terminase, large subunit	NA
UHGV-0083172_30	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0083172_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083172_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083172_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083172_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0083172_31	PHROG	phrog_1066	NA	unknown function
UHGV-0083172_31	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0083172_31	Structural annotation	TIGR01558	NA	NA
UHGV-0083172_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0083172_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083172_32	UniRef90	UniRef90_R7D851	HNH endonuclease domain protein	NA
UHGV-0083172_32	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0083172_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0083172_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083172_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083172_33	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0083172_33	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0083172_34	PHROG	phrog_1828	NA	unknown function
UHGV-0083172_34	eggNOG-mapper	1285586.H131_21357	NA	NA
UHGV-0083172_35	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0083172_35	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0083172_35	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-0083172_35	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0083172_35	Pfam	PF00692	dUTPase	dUTPase
UHGV-0083172_35	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0083172_35	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0083172_35	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0083172_36	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-0083172_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083172_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083172_37	UniRef90	UniRef90_A0A1Y4GBS3	Single-stranded DNA-binding protein	NA
UHGV-0083172_37	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0083172_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083172_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083172_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083172_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0083172_37	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0083172_38	PHROG	phrog_21723	NA	unknown function
UHGV-0083172_38	UniRef90	UniRef90_UPI001F233550	30S ribosomal protein S13	NA
UHGV-0083172_38	eggNOG-mapper	1246445.ANAY01000019_gene1630	Helix-hairpin-helix DNA-binding motif class 1	NA
UHGV-0083172_38	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0083172_38	COG	COG0099	Ribosomal protein S13	NA
UHGV-0083172_38	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0083172_41	KOfam	K14059	int; integrase	NA
UHGV-0083172_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0083172_41	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-0083172_41	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0083172_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083172_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083172_41	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0083172_43	PHROG	phrog_1454	NA	unknown function
UHGV-0083172_43	eggNOG-mapper	1460634.JCM19037_4158	NA	NA
UHGV-0083172_45	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0083172_45	UniRef90	UniRef90_UPI001A91F41C	NA	NA
UHGV-0083172_45	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0083172_45	Pfam	PF11753	NA	DUF3310
UHGV-0083172_48	PHROG	phrog_24189	NA	unknown function
UHGV-0083172_48	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-0083172_48	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0083172_48	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0083172_48	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0083172_50	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0083172_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0083172_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083172_54	UniRef90	UniRef90_UPI001C3CE8CF	helix-turn-helix transcriptional regulator	NA
UHGV-0083172_54	eggNOG-mapper	1410632.JHWW01000010_gene2681	Helix-turn-helix domain	NA
UHGV-0083172_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083172_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0083172_54	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0083172_55	UniRef90	UniRef90_A0A4Q2K3G5	XRE family transcriptional regulator	NA
UHGV-0083172_55	eggNOG-mapper	700015.Corgl_1236	Helix-turn-helix	NA
UHGV-0083172_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083172_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0083172_55	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0083172_57	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0083172_57	PHROG	phrog_95	integrase	integration and excision
UHGV-0083172_57	UniRef90	UniRef90_UPI0013A61849	recombinase family protein	NA
UHGV-0083172_57	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0083172_57	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0083172_57	Pfam	PF07508	Recombinase	Recombinase
UHGV-0083172_57	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0083172_57	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0083172_57	Structural annotation	PF00239, NF041201, COG2452	NA	NA