UHGV-0083228

Genome information

Genome length 13,398 bps

CDS count 20

Completeness 59.71% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083228
vOTU ID	vOTU-034173
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_156860
BioSample	SAMEA2784516
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.22
Jumbo phage	No

Genome content
Genome length	13,398 bps
GC content	42.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	90.39%
Average CDS length	606.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083228_10	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083228_10	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0083228_10	Structural annotation	PF17427	NA	NA
UHGV-0083228_11	Structural annotation	PF05435	NA	NA
UHGV-0083228_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0083228_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0083228_12	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0083228_12	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0083228_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0083228_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0083228_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-0083228_13	UniRef90	UniRef90_A0A843H8G4	Phage DNA encapsidation protein	NA
UHGV-0083228_13	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0083228_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0083228_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0083228_15	PHROG	phrog_11037	NA	unknown function
UHGV-0083228_15	eggNOG-mapper	1449336.JQLO01000001_gene1030	heme binding	NA
UHGV-0083228_15	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0083228_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0083228_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0083228_17	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0083228_17	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0083228_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0083228_17	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0083228_18	PHROG	phrog_380	endolysin	lysis
UHGV-0083228_18	UniRef90	UniRef90_A0A1Q6PX57	SH3b domain-containing protein	NA
UHGV-0083228_18	eggNOG-mapper	693746.OBV_42500	NlpC p60 family	NA
UHGV-0083228_18	Pfam	PF01476	LysM domain	LysM
UHGV-0083228_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0083228_18	Structural annotation	PF00877, NF033742, COG0791	NA	NA
UHGV-0083228_19	PHROG	phrog_2248	tail protein	tail
UHGV-0083228_19	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0083228_19	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0083228_19	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0083228_19	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0083228_19	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0083228_20	PHROG	phrog_2038	upper collar connector	connector
UHGV-0083228_20	UniRef90	UniRef90_P04332	Portal protein	NA
UHGV-0083228_20	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0083228_20	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0083228_20	Structural annotation	PF05352, TIGR01537, COG4695	NA	NA