UHGV-0083237

Genome information

Genome length 43,437 bps

CDS count 73

Completeness 99.90% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083237
vOTU ID	vOTU-010210
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_154098
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.35
Jumbo phage	No

Genome content
Genome length	43,437 bps
GC content	55.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	88.34%
Average CDS length	529.69 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083237_1	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0083237_1	PHROG	phrog_894	endolysin	lysis
UHGV-0083237_1	UniRef90	UniRef90_E2ZFH4	Peptidase M15	NA
UHGV-0083237_1	eggNOG-mapper	748224.HMPREF9436_00407	Peptidase M15A	NA
UHGV-0083237_1	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0083237_1	COG	COG3108	NA	NA
UHGV-0083237_1	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0083237_2	PHROG	phrog_1382	NA	unknown function
UHGV-0083237_2	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-0083237_2	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0083237_2	Structural annotation	NF040910	NA	NA
UHGV-0083237_3	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0083237_3	COG	COG5492	NA	NA
UHGV-0083237_4	PHROG	phrog_3558	tail protein	tail
UHGV-0083237_4	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0083237_4	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0083237_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0083237_4	COG	COG4926	Phage-related protein	NA
UHGV-0083237_4	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0083237_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0083237_5	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0083237_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0083237_5	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0083237_6	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0083237_6	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0083237_6	eggNOG-mapper	585199.HMPREF0577_0480	tape measure	NA
UHGV-0083237_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0083237_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0083237_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0083237_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0083237_9	PHROG	phrog_885	major tail protein	tail
UHGV-0083237_9	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0083237_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0083237_10	Structural annotation	PF13554	NA	NA
UHGV-0083237_11	PHROG	phrog_17977	NA	unknown function
UHGV-0083237_11	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0083237_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083237_13	PHROG	phrog_544	major head protein	head and packaging
UHGV-0083237_13	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0083237_13	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0083237_13	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0083237_14	Structural annotation	PF06810	NA	NA
UHGV-0083237_15	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0083237_15	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0083237_15	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0083237_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083237_16	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0083237_16	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0083237_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0083237_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0083237_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0083237_18	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0083237_18	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0083237_18	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0083237_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0083237_18	COG	COG2369	NA	NA
UHGV-0083237_18	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0083237_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0083237_20	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0083237_20	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0083237_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083237_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0083237_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083237_21	PHROG	phrog_10250	NA	unknown function
UHGV-0083237_21	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0083237_21	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0083237_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0083237_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0083237_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0083237_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083237_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0083237_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0083237_22	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0083237_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0083237_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0083237_23	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0083237_23	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0083237_23	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0083237_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0083237_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0083237_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0083237_23	COG	COG0863	DNA modification methylase	NA
UHGV-0083237_23	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0083237_25	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0083237_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0083237_27	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083237_27	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0083237_27	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0083237_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0083237_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0083237_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0083237_28	PHROG	phrog_3136	NA	unknown function
UHGV-0083237_28	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0083237_28	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0083237_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0083237_28	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0083237_29	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0083237_29	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0083237_29	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0083237_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0083237_30	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0083237_30	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0083237_30	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0083237_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0083237_32	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0083237_33	PHROG	phrog_15768	NA	unknown function
UHGV-0083237_33	UniRef90	UniRef90_A0A3F3JUK4	NA	NA
UHGV-0083237_33	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0083237_33	Pfam	PF19808	NA	DUF6291
UHGV-0083237_33	Structural annotation	PF19808	NA	NA
UHGV-0083237_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083237_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083237_34	UniRef90	UniRef90_UPI001C00AA91	single-stranded DNA-binding protein	NA
UHGV-0083237_34	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0083237_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083237_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083237_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083237_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0083237_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0083237_35	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0083237_35	UniRef90	UniRef90_A0A1G8PW75	RecT family protein	NA
UHGV-0083237_35	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0083237_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0083237_37	Structural annotation	PF14120	NA	NA
UHGV-0083237_39	Structural annotation	PF09537	NA	NA
UHGV-0083237_40	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0083237_41	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0083237_43	PHROG	phrog_4433	NA	unknown function
UHGV-0083237_43	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0083237_43	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0083237_44	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0083237_44	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0083237_45	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0083237_45	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0083237_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0083237_46	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0083237_46	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0083237_46	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-0083237_46	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0083237_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0083237_46	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0083237_46	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0083237_47	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0083237_47	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0083237_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083237_48	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-0083237_48	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0083237_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083237_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083237_48	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0083237_50	PHROG	phrog_888	NA	unknown function
UHGV-0083237_50	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0083237_50	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0083237_50	Pfam	PF14471	NA	DUF4428
UHGV-0083237_50	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0083237_50	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0083237_53	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0083237_54	KOfam	K14059	int; integrase	NA
UHGV-0083237_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0083237_54	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0083237_54	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0083237_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083237_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0083237_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0083237_56	Structural annotation	PF12510	NA	NA
UHGV-0083237_57	PHROG	phrog_20016	NA	unknown function
UHGV-0083237_57	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0083237_57	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0083237_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0083237_58	PHROG	phrog_16490	NA	unknown function
UHGV-0083237_58	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0083237_59	PHROG	phrog_22984	NA	unknown function
UHGV-0083237_60	PHROG	phrog_21718	NA	unknown function
UHGV-0083237_60	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0083237_61	PHROG	phrog_3754	NA	unknown function
UHGV-0083237_61	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0083237_63	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0083237_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083237_63	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0083237_64	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083237_64	UniRef90	UniRef90_UPI001C0BF339	transcriptional regulator	NA
UHGV-0083237_64	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0083237_64	Pfam	PF00847	AP2 domain	AP2
UHGV-0083237_64	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0083237_65	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0083237_68	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0083237_68	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0083237_68	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0083237_68	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0083237_68	Structural annotation	PF10651	NA	NA
UHGV-0083237_69	PHROG	phrog_15303	NA	unknown function
UHGV-0083237_69	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0083237_70	eggNOG-mapper	657322.FPR_21890	NA	NA
UHGV-0083237_71	KOfam	K07273	acm; lysozyme	NA
UHGV-0083237_71	PHROG	phrog_291	endolysin	lysis
UHGV-0083237_71	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0083237_71	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0083237_71	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0083237_71	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0083237_71	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0083237_72	PHROG	phrog_2310	NA	unknown function