UHGV-0083303

Genome information

Genome length 32,380 bps

CDS count 56

Completeness 86.81% (medium-quality)

geNomad score 0.9638

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083303
vOTU ID	vOTU-035023
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_155649
BioSample	SAMEA2784486
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9638
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.18
Jumbo phage	No

Genome content
Genome length	32,380 bps
GC content	47.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	87.70%
Average CDS length	511.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083303_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0083303_1	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0083303_1	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0083303_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0083303_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0083303_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083303_2	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0083303_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0083303_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083303_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083303_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083303_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0083303_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083303_3	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0083303_3	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0083303_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083303_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083303_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083303_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083303_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0083303_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0083303_4	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0083303_4	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0083303_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0083303_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0083303_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0083303_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083303_5	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0083303_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0083303_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083303_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0083303_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083303_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083303_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083303_6	PHROG	phrog_749	NA	unknown function
UHGV-0083303_6	UniRef90	UniRef90_A0A371IJS1	Phage gp6-like head-tail connector protein	NA
UHGV-0083303_6	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0083303_7	PHROG	phrog_19734	NA	unknown function
UHGV-0083303_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0083303_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0083303_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0083303_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0083303_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083303_8	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0083303_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0083303_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083303_9	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0083303_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0083303_9	Structural annotation	TIGR01725	NA	NA
UHGV-0083303_10	PHROG	phrog_88	major tail protein	tail
UHGV-0083303_10	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0083303_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0083303_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0083303_10	COG	COG5492	NA	NA
UHGV-0083303_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0083303_11	Structural annotation	PF11836	NA	NA
UHGV-0083303_13	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0083303_13	UniRef90	UniRef90_UPI00189A2A14	phage tail tape measure protein	NA
UHGV-0083303_13	eggNOG-mapper	1291050.JAGE01000001_gene447	tape measure	NA
UHGV-0083303_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0083303_13	Structural annotation	COG5280	NA	NA
UHGV-0083303_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0083303_15	PHROG	phrog_13879	NA	unknown function
UHGV-0083303_15	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0083303_15	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0083303_16	PHROG	phrog_18725	NA	unknown function
UHGV-0083303_16	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0083303_17	Structural annotation	PF09826, MF_03001, TIGR04528, COG2706	NA	NA
UHGV-0083303_19	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0083303_19	eggNOG-mapper	1232449.BAHV02000010_gene2734	NA	NA
UHGV-0083303_20	Structural annotation	PF07328, NF001949	NA	NA
UHGV-0083303_21	PHROG	phrog_881	holin	lysis
UHGV-0083303_21	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0083303_21	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0083303_21	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0083303_21	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0083303_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0083303_22	PHROG	phrog_15001	endolysin	lysis
UHGV-0083303_22	UniRef90	UniRef90_A0A416QZJ4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083303_22	eggNOG-mapper	1216932.CM240_1376	Sporulation related domain	NA
UHGV-0083303_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0083303_22	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0083303_22	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0083303_23	UniRef90	UniRef90_A0A1Q6RP25	HTH cro/C1-type domain-containing protein	NA
UHGV-0083303_23	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0083303_24	KOfam	K14059	int; integrase	NA
UHGV-0083303_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0083303_24	UniRef90	UniRef90_UPI001C03825E	site-specific integrase	NA
UHGV-0083303_24	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0083303_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083303_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083303_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0083303_25	UniRef90	UniRef90_UPI0008F92EE3	type II toxin-antitoxin system Phd/YefM family antitoxin	NA
UHGV-0083303_25	eggNOG-mapper	1232443.BAIA02000173_gene3696	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0083303_25	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0083303_25	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0083303_25	COG	COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	NA
UHGV-0083303_26	KOfam	K07063	NA	NA
UHGV-0083303_26	UniRef90	UniRef90_UPI0008F89376	putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-0083303_26	eggNOG-mapper	478749.BRYFOR_05441	PIN domain	NA
UHGV-0083303_26	Pfam	PF13470	PIN domain	PIN_3
UHGV-0083303_26	NCBIFam	TIGR00305.1	putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-0083303_26	COG	COG1569	Predicted nucleic acid-binding protein, contains PIN domain	NA
UHGV-0083303_27	PHROG	phrog_17982	NA	unknown function
UHGV-0083303_27	UniRef90	UniRef90_A0A2K2FA90	NA	NA
UHGV-0083303_27	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0083303_27	Pfam	PF14020	NA	DUF4236
UHGV-0083303_27	Structural annotation	PF14020	NA	NA
UHGV-0083303_28	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0083303_28	UniRef90	UniRef90_UPI000F633619	helix-turn-helix domain-containing protein	NA
UHGV-0083303_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083303_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083303_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083303_29	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0083303_29	eggNOG-mapper	610130.Closa_1361	Helix-turn-helix XRE-family like proteins	NA
UHGV-0083303_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083303_29	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0083303_29	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0083303_30	UniRef90	UniRef90_UPI00164C60EE	helix-turn-helix domain-containing protein	NA
UHGV-0083303_30	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0083303_38	PHROG	phrog_14970	NA	unknown function
UHGV-0083303_38	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0083303_38	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0083303_38	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0083303_38	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0083303_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0083303_39	PHROG	phrog_398	NA	unknown function
UHGV-0083303_39	UniRef90	UniRef90_UPI00137B6F1E	putative HNHc nuclease	NA
UHGV-0083303_39	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0083303_39	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0083303_39	Structural annotation	PF16784	NA	NA
UHGV-0083303_40	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0083303_40	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0083303_41	PHROG	phrog_16304	NA	unknown function
UHGV-0083303_41	UniRef90	UniRef90_U2R397	NA	NA
UHGV-0083303_41	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0083303_41	AcrCatalog	cluster_38323	NA	NA
UHGV-0083303_41	Pfam	PF19808	NA	DUF6291
UHGV-0083303_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083303_41	Structural annotation	PF19808	NA	NA
UHGV-0083303_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083303_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083303_42	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0083303_42	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0083303_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083303_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083303_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083303_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0083303_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0083303_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0083303_43	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083303_43	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0083303_43	eggNOG-mapper	469604.HMPREF0946_01097	NA	NA
UHGV-0083303_43	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0083303_46	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0083303_46	PHROG	phrog_30550	NA	unknown function
UHGV-0083303_46	UniRef90	UniRef90_A0A6N9PV97	Hydrolase_2 domain-containing protein	NA
UHGV-0083303_46	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0083303_48	PHROG	phrog_14105	NA	unknown function
UHGV-0083303_48	eggNOG-mapper	268407.PWYN_12330	dextransucrase activity	NA
UHGV-0083303_48	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0083303_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0083303_51	UniRef90	UniRef90_A0A1U7MGI4	HTH-type transcriptional regulator Xre	NA
UHGV-0083303_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083303_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083303_54	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0083303_54	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0083303_54	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0083303_56	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083303_56	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0083303_56	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0083303_56	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0083303_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA