UHGV-0083326

Genome information

Genome length 35,402 bps

CDS count 53

Completeness 85.89% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083326
vOTU ID	vOTU-017089
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_154779
BioSample	SAMEA2784479
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.32
Jumbo phage	No

Genome content
Genome length	35,402 bps
GC content	54.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.53%
Average CDS length	635.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083326_1	PHROG	phrog_18723	NA	unknown function
UHGV-0083326_2	UniRef90	UniRef90_A0A396Q5D6	H_lectin domain-containing protein	NA
UHGV-0083326_3	PHROG	phrog_18725	NA	unknown function
UHGV-0083326_3	eggNOG-mapper	1203606.HMPREF1526_00967	Concanavalin A-like lectin/glucanases superfamily	NA
UHGV-0083326_3	COG	COG3209	NA	NA
UHGV-0083326_4	PHROG	phrog_13879	NA	unknown function
UHGV-0083326_4	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0083326_4	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0083326_5	eggNOG-mapper	1203606.HMPREF1526_00969	NA	NA
UHGV-0083326_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0083326_6	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0083326_6	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0083326_6	UniRef90	UniRef90_UPI00189B6D86	phage tail tape measure protein	NA
UHGV-0083326_6	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-0083326_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0083326_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0083326_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0083326_6	Structural annotation	PF10145, PF09486, PF05816, TIGR01760, TIGR03017, COG3853	NA	NA
UHGV-0083326_8	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0083326_9	PHROG	phrog_88	major tail protein	tail
UHGV-0083326_9	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0083326_9	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0083326_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0083326_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083326_10	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0083326_10	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0083326_10	Structural annotation	TIGR01725	NA	NA
UHGV-0083326_11	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0083326_11	eggNOG-mapper	742738.HMPREF9460_04074	NA	NA
UHGV-0083326_11	Structural annotation	PF05657	NA	NA
UHGV-0083326_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-0083326_12	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0083326_12	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0083326_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0083326_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0083326_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0083326_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083326_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0083326_13	UniRef90	UniRef90_UPI0018979B98	head-tail connector protein	NA
UHGV-0083326_13	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-0083326_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0083326_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0083326_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083326_14	UniRef90	UniRef90_UPI001898B939	phage major capsid protein	NA
UHGV-0083326_14	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0083326_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083326_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083326_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083326_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083326_15	KOfam	K06904	NA	NA
UHGV-0083326_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0083326_15	UniRef90	UniRef90_UPI0018981ADD	HK97 family phage prohead protease	NA
UHGV-0083326_15	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0083326_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0083326_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0083326_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0083326_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083326_16	UniRef90	UniRef90_UPI0018989A28	phage portal protein	NA
UHGV-0083326_16	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0083326_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083326_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083326_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083326_16	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0083326_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083326_17	UniRef90	UniRef90_UPI0018982ECF	terminase large subunit	NA
UHGV-0083326_17	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0083326_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083326_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083326_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083326_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0083326_18	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0083326_18	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0083326_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0083326_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0083326_19	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083326_19	UniRef90	UniRef90_UPI001897DF0D	HNH endonuclease	NA
UHGV-0083326_19	eggNOG-mapper	508419.F8J1A6_9CAUD	HNH endonuclease	NA
UHGV-0083326_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0083326_20	eggNOG-mapper	445972.ANACOL_01835	NA	NA
UHGV-0083326_20	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0083326_20	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0083326_22	PHROG	phrog_3777	NA	unknown function
UHGV-0083326_22	UniRef90	UniRef90_UPI001A9B9148	NA	NA
UHGV-0083326_22	eggNOG-mapper	767817.Desgi_3545	NA	NA
UHGV-0083326_22	Pfam	PF12957	NA	DUF3846
UHGV-0083326_22	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0083326_22	Structural annotation	PF12957	NA	NA
UHGV-0083326_23	UniRef90	UniRef90_UPI001899EFAC	NA	NA
UHGV-0083326_24	AcrCatalog	cluster_171373	NA	NA
UHGV-0083326_25	PHROG	phrog_33866	NA	unknown function
UHGV-0083326_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0083326_29	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0083326_29	UniRef90	UniRef90_A0A417TSH5	Methyltransferase	NA
UHGV-0083326_29	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0083326_29	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0083326_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0083326_29	COG	COG0863	DNA modification methylase	NA
UHGV-0083326_29	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0083326_32	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083326_32	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0083326_32	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0083326_32	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0083326_32	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0083326_32	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0083326_34	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0083326_34	UniRef90	UniRef90_A0A396QBH7	Nucleotide pyrophosphohydrolase	NA
UHGV-0083326_34	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0083326_34	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0083326_34	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0083326_34	Structural annotation	PF03819, MF_01019, NF008986, COG1694	NA	NA
UHGV-0083326_35	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0083326_35	UniRef90	UniRef90_A0A3E2XXV5	NA	NA
UHGV-0083326_35	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0083326_35	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0083326_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0083326_38	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0083326_38	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0083326_38	UniRef90	UniRef90_A0A3E2XZ56	MBL fold metallo-hydrolase	NA
UHGV-0083326_38	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0083326_38	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0083326_38	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0083326_38	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0083326_39	PHROG	phrog_862	NA	unknown function
UHGV-0083326_39	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0083326_39	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0083326_40	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0083326_40	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083326_40	UniRef90	UniRef90_A0A3E2XY48	AAA_23 domain-containing protein	NA
UHGV-0083326_40	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0083326_40	Pfam	PF13476	AAA domain	AAA_23
UHGV-0083326_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083326_40	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0083326_43	Structural annotation	PF11112	NA	NA
UHGV-0083326_44	UniRef90	UniRef90_UPI001A9B62BF	helix-turn-helix domain-containing protein	NA
UHGV-0083326_44	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0083326_44	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0083326_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0083326_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0083326_45	UniRef90	UniRef90_UPI001A9AEEA3	helix-turn-helix domain-containing protein	NA
UHGV-0083326_45	eggNOG-mapper	1095750.HMPREF9970_1005	Helix-turn-helix domain	NA
UHGV-0083326_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083326_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0083326_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0083326_45	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0083326_46	UniRef90	UniRef90_UPI00156DF264	FxLYD domain-containing protein	NA
UHGV-0083326_46	eggNOG-mapper	1408323.JQKK01000024_gene1319	NA	NA
UHGV-0083326_46	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0083326_46	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0083326_48	KOfam	K14059	int; integrase	NA
UHGV-0083326_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0083326_48	UniRef90	UniRef90_A0A3E2XZ68	Site-specific integrase	NA
UHGV-0083326_48	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-0083326_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0083326_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083326_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083326_48	Structural annotation	PF00589, MF_01808, NF002331, COG4973	NA	NA
UHGV-0083326_49	eggNOG-mapper	1195236.CTER_0450	NA	NA
UHGV-0083326_49	Pfam	PF17419	Methylamine utilization protein MauJ	MauJ
UHGV-0083326_50	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0083326_50	PHROG	phrog_35436	amidase	lysis
UHGV-0083326_50	UniRef90	UniRef90_UPI001D061122	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083326_50	eggNOG-mapper	553973.CLOHYLEM_07195	Ami_2	NA
UHGV-0083326_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0083326_50	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0083326_50	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0083326_51	PHROG	phrog_199	holin	lysis
UHGV-0083326_51	UniRef90	UniRef90_UPI00189A7512	phage holin family protein	NA
UHGV-0083326_51	eggNOG-mapper	1121333.JMLH01000047_gene1005	Bacteriophage holin family	NA
UHGV-0083326_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0083326_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0083326_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0083326_52	PHROG	phrog_1382	NA	unknown function
UHGV-0083326_52	eggNOG-mapper	1336234.JAGN01000004_gene512	NA	NA