UHGV-0083433

Genome information

Genome length 42,014 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083433
vOTU ID	vOTU-060928
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_159365
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.74
Jumbo phage	No

Genome content
Genome length	42,014 bps
GC content	45.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.50%
Average CDS length	684.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083433_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0083433_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0083433_1	UniRef90	UniRef90_A0A3C1J235	HTH cro/C1-type domain-containing protein	NA
UHGV-0083433_1	eggNOG-mapper	1121289.JHVL01000079_gene1186	sequence-specific DNA binding	NA
UHGV-0083433_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0083433_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083433_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083433_1	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0083433_3	eggNOG-mapper	1449335.JQLG01000004_gene843	NA	NA
UHGV-0083433_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0083433_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083433_4	UniRef90	UniRef90_A0A174S783	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0083433_4	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0083433_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083433_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083433_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0083433_5	eggNOG-mapper	397290.C810_05154	NA	NA
UHGV-0083433_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0083433_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0083433_6	UniRef90	UniRef90_A0A396PA19	Oxidoreductase	NA
UHGV-0083433_6	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0083433_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0083433_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0083433_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0083433_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0083433_8	UniRef90	UniRef90_A0A396P1J1	XRE family transcriptional regulator	NA
UHGV-0083433_8	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0083433_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0083433_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0083433_16	PHROG	phrog_674	NA	unknown function
UHGV-0083433_16	UniRef90	UniRef90_A0A416ZL44	NA	NA
UHGV-0083433_16	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0083433_16	Pfam	PF07083	NA	DUF1351
UHGV-0083433_16	Structural annotation	PF07083	NA	NA
UHGV-0083433_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0083433_17	UniRef90	UniRef90_A0A174S6P0	ERF superfamily	NA
UHGV-0083433_17	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0083433_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-0083433_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083433_17	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0083433_18	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0083433_18	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0083433_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083433_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083433_19	UniRef90	UniRef90_A0A174S775	Single-stranded DNA-binding protein	NA
UHGV-0083433_19	eggNOG-mapper	1280685.AUKC01000081_gene1299	Single-strand binding protein family	NA
UHGV-0083433_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083433_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083433_19	Structural annotation	PF00436, MF_00984, NF005242	NA	NA
UHGV-0083433_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083433_20	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-0083433_20	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0083433_20	Pfam	PF06356	NA	DUF1064
UHGV-0083433_20	Structural annotation	PF06356	NA	NA
UHGV-0083433_21	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0083433_21	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0083433_21	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0083433_21	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0083433_21	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0083433_21	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0083433_24	PHROG	phrog_31560	NA	unknown function
UHGV-0083433_24	eggNOG-mapper	585501.HMPREF6123_0413	NA	NA
UHGV-0083433_25	eggNOG-mapper	760568.Desku_0913	NA	NA
UHGV-0083433_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083433_26	UniRef90	UniRef90_A0A174SAH0	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0083433_26	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0083433_26	Structural annotation	PF02996	NA	NA
UHGV-0083433_27	PHROG	phrog_10226	NA	unknown function
UHGV-0083433_27	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0083433_27	Structural annotation	COG4127	NA	NA
UHGV-0083433_28	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0083433_28	UniRef90	UniRef90_A0A373P435	Terminase	NA
UHGV-0083433_28	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0083433_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0083433_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0083433_28	COG	COG5484	NA	NA
UHGV-0083433_28	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0083433_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083433_29	PHROG	phrog_10250	NA	unknown function
UHGV-0083433_29	UniRef90	UniRef90_A0A373P5H0	PBSX family phage terminase large subunit	NA
UHGV-0083433_29	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0083433_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0083433_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0083433_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083433_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0083433_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0083433_30	UniRef90	UniRef90_A0A373P643	Phage portal protein	NA
UHGV-0083433_30	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0083433_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083433_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0083433_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0083433_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0083433_31	UniRef90	UniRef90_A0A396P1E8	Phage_Mu_F domain-containing protein	NA
UHGV-0083433_31	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0083433_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0083433_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0083433_31	COG	COG2369	NA	NA
UHGV-0083433_31	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0083433_33	PHROG	phrog_3675	NA	unknown function
UHGV-0083433_33	UniRef90	UniRef90_A0A174SAX8	YjcQ protein	NA
UHGV-0083433_33	eggNOG-mapper	1321784.HMPREF1987_01070	YjcQ protein	NA
UHGV-0083433_33	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0083433_33	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0083433_34	PHROG	phrog_1048	NA	unknown function
UHGV-0083433_34	UniRef90	UniRef90_A0A373P4J3	NA	NA
UHGV-0083433_34	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0083433_34	Pfam	PF11195	NA	DUF2829
UHGV-0083433_34	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0083433_34	Structural annotation	PF11195	NA	NA
UHGV-0083433_35	KOfam	K07584	NA	NA
UHGV-0083433_35	PHROG	phrog_4478	peptidase	other
UHGV-0083433_35	UniRef90	UniRef90_A0A373P5W7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0083433_35	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0083433_35	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0083433_35	COG	COG2868	NA	NA
UHGV-0083433_35	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0083433_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0083433_36	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-0083433_36	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0083433_36	Pfam	PF14265	NA	DUF4355
UHGV-0083433_36	Structural annotation	PF14265	NA	NA
UHGV-0083433_37	PHROG	phrog_544	major head protein	head and packaging
UHGV-0083433_37	UniRef90	UniRef90_A0A174PKI4	S-l_SbsC_C domain-containing protein	NA
UHGV-0083433_37	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0083433_37	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0083433_37	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0083433_38	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0083433_38	UniRef90	UniRef90_UPI0018F16521	Rho termination protein	NA
UHGV-0083433_38	eggNOG-mapper	1197953.I6T7M8_9CAUD	DNA-dependent transcription, termination	NA
UHGV-0083433_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0083433_39	UniRef90	UniRef90_A0A174PRY0	Phage gp6-like head-tail connector protein	NA
UHGV-0083433_39	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0083433_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0083433_39	Structural annotation	PF05135	NA	NA
UHGV-0083433_40	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0083433_40	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0083433_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0083433_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083433_41	UniRef90	UniRef90_A0A174PPX0	Phage protein, HK97 gp10 family	NA
UHGV-0083433_41	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0083433_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0083433_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0083433_41	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0083433_42	PHROG	phrog_176	tail terminator	connector
UHGV-0083433_42	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0083433_42	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0083433_42	Structural annotation	PF11367	NA	NA
UHGV-0083433_43	PHROG	phrog_238	major tail protein	tail
UHGV-0083433_43	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-0083433_43	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0083433_43	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0083433_43	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0083433_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0083433_44	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0083433_44	UniRef90	UniRef90_A0A174PQ19	NA	NA
UHGV-0083433_44	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0083433_44	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0083433_44	Structural annotation	PF12363	NA	NA
UHGV-0083433_45	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0083433_45	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-0083433_45	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0083433_46	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0083433_46	UniRef90	UniRef90_A0A174PKR4	Phage-related protein	NA
UHGV-0083433_46	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0083433_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0083433_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0083433_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083433_46	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0083433_47	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0083433_47	UniRef90	UniRef90_A0A174PQE5	Phage-related protein	NA
UHGV-0083433_47	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-0083433_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0083433_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0083433_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0083433_47	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0083433_48	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0083433_48	PHROG	phrog_9478	minor tail protein	tail
UHGV-0083433_48	UniRef90	UniRef90_A0A373P409	Peptidase S74 domain-containing protein	NA
UHGV-0083433_48	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-0083433_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0083433_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0083433_48	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0083433_48	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0083433_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0083433_48	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0083433_50	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0083433_51	PHROG	phrog_9428	NA	unknown function
UHGV-0083433_51	UniRef90	UniRef90_A0A2N5P2E7	Serine/threonine protein kinase	NA
UHGV-0083433_51	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0083433_52	PHROG	phrog_15303	NA	unknown function
UHGV-0083433_52	eggNOG-mapper	755731.Clo1100_1624	NA	NA
UHGV-0083433_53	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-0083433_53	PHROG	phrog_14030	NA	unknown function
UHGV-0083433_53	UniRef90	UniRef90_A0A373P5J0	NlpC/P60 domain-containing protein	NA
UHGV-0083433_53	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0083433_53	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0083433_53	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0083433_53	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0083433_53	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0083433_53	Structural annotation	PF18013, PF05382, PF01471, NF033742, NF038080, COG3409, COG0791, COG4991	NA	NA
UHGV-0083433_54	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0083433_54	PHROG	phrog_7573	NA	unknown function
UHGV-0083433_54	UniRef90	UniRef90_R7JVK4	Mn-containing catalase	NA
UHGV-0083433_54	eggNOG-mapper	180332.JTGN01000007_gene3665	PFAM Manganese containing catalase	NA
UHGV-0083433_54	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0083433_54	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0083433_54	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-0083433_55	PHROG	phrog_1129	holin	lysis
UHGV-0083433_55	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0083433_55	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0083433_55	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0083433_55	Structural annotation	PF16079	NA	NA
UHGV-0083433_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0083433_56	PHROG	phrog_3088	amidase	lysis
UHGV-0083433_56	UniRef90	UniRef90_A0A174NGB2	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0083433_56	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0083433_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0083433_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083433_56	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA