UHGV-0083442

Genome information

Genome length 28,204 bps

CDS count 34

Completeness 72.54% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083442
vOTU ID	vOTU-035868
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_161224
BioSample	SAMEA3178943
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.52
Jumbo phage	No

Genome content
Genome length	28,204 bps
GC content	28.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	92.74%
Average CDS length	776.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083442_1	KOfam	K14059	int; integrase	NA
UHGV-0083442_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0083442_1	UniRef90	UniRef90_A0A0S6UFB5	Integrase	NA
UHGV-0083442_1	eggNOG-mapper	431943.CKL_2943	Belongs to the 'phage' integrase family	NA
UHGV-0083442_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0083442_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083442_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083442_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0083442_3	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0083442_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083442_3	UniRef90	UniRef90_R5YVI1	HTH-type transcriptional regulator SinR	NA
UHGV-0083442_3	eggNOG-mapper	580340.Tlie_1437	Transcriptional regulator, XRE family	NA
UHGV-0083442_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0083442_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083442_3	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0083442_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0083442_3	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0083442_4	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0083442_4	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0083442_5	PHROG	phrog_9659	NA	unknown function
UHGV-0083442_7	UniRef90	UniRef90_R5Z2C8	Peptidoglycan-binding domain 1 protein	NA
UHGV-0083442_7	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0083442_7	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0083442_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0083442_7	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0083442_7	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0083442_9	PHROG	phrog_2310	NA	unknown function
UHGV-0083442_9	eggNOG-mapper	1415774.U728_3409	NA	NA
UHGV-0083442_10	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0083442_10	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0083442_11	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0083442_12	PHROG	phrog_7064	tail protein	tail
UHGV-0083442_13	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0083442_13	COG	COG4124	Beta-mannanase	NA
UHGV-0083442_14	Structural annotation	PF20747	NA	NA
UHGV-0083442_15	PHROG	phrog_13564	minor tail protein	tail
UHGV-0083442_15	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0083442_15	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0083442_15	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0083442_16	PHROG	phrog_26308	NA	unknown function
UHGV-0083442_16	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0083442_16	COG	COG3103	NA	NA
UHGV-0083442_17	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0083442_17	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0083442_17	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0083442_17	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0083442_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0083442_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0083442_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0083442_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0083442_18	Structural annotation	PF11836	NA	NA
UHGV-0083442_19	PHROG	phrog_88	major tail protein	tail
UHGV-0083442_19	UniRef90	UniRef90_UPI001CBE6475	phage tail protein	NA
UHGV-0083442_19	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0083442_19	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0083442_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0083442_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0083442_20	eggNOG-mapper	1280681.AUJZ01000038_gene338	NA	NA
UHGV-0083442_20	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0083442_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083442_21	UniRef90	UniRef90_UPI00040399DB	HK97 gp10 family phage protein	NA
UHGV-0083442_21	eggNOG-mapper	1121871.AUAT01000030_gene1030	NA	NA
UHGV-0083442_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0083442_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0083442_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0083442_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0083442_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083442_23	PHROG	phrog_5223	neck protein	connector
UHGV-0083442_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083442_24	UniRef90	UniRef90_A0A1C5VH93	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083442_24	eggNOG-mapper	1219626.HMPREF1639_07425	Phage capsid family	NA
UHGV-0083442_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083442_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083442_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083442_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083442_25	PHROG	phrog_16951	NA	unknown function
UHGV-0083442_25	eggNOG-mapper	1410617.JHXH01000012_gene652	NA	NA
UHGV-0083442_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0083442_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083442_26	UniRef90	UniRef90_A0A1C5VH40	Phage portal protein, HK97 family	NA
UHGV-0083442_26	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0083442_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083442_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083442_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083442_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083442_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083442_27	UniRef90	UniRef90_A0A1C5VGI7	Phage terminase-like protein, large subunit	NA
UHGV-0083442_27	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0083442_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083442_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083442_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083442_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0083442_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0083442_28	UniRef90	UniRef90_A0A1I3QJG2	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0083442_28	eggNOG-mapper	1219626.HMPREF1639_07405	phage terminase small subunit	NA
UHGV-0083442_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0083442_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0083442_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0083442_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0083442_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0083442_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083442_30	UniRef90	UniRef90_UPI001B82F799	HNH endonuclease	NA
UHGV-0083442_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0083442_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083442_30	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0083442_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083442_34	Structural annotation	PF07374, NF008895	NA	NA