UHGV-0083445

Genome information

Genome length 36,606 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9538

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083445
vOTU ID	vOTU-008434
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_161214
BioSample	SAMEA3178943
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9538
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.88
Jumbo phage	No

Genome content
Genome length	36,606 bps
GC content	54.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	82.19%
Average CDS length	643.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083445_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0083445_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0083445_1	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0083445_1	eggNOG-mapper	1235835.C814_03413	Resolvase, N terminal domain	NA
UHGV-0083445_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0083445_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0083445_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0083445_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0083445_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0083445_2	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0083445_2	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0083445_2	UniRef90	UniRef90_UPI000C07CF86	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0083445_2	eggNOG-mapper	768710.DesyoDRAFT_1274	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0083445_2	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0083445_2	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0083445_2	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0083445_3	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0083445_3	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0083445_3	UniRef90	UniRef90_UPI000C08A710	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0083445_3	eggNOG-mapper	138119.DSY3841	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0083445_3	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0083445_3	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0083445_3	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0083445_4	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0083445_4	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0083445_4	UniRef90	UniRef90_A0A1Y3RCF2	BRCT domain-containing protein	NA
UHGV-0083445_4	eggNOG-mapper	264732.Moth_1154	HELICc2	NA
UHGV-0083445_4	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0083445_4	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0083445_4	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0083445_4	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0083445_4	COG	COG1199	Rad3-related DNA helicase DinG	NA
UHGV-0083445_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0083445_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0083445_5	UniRef90	UniRef90_A0A316TAV5	HTH cro/C1-type domain-containing protein	NA
UHGV-0083445_5	eggNOG-mapper	887929.HMP0721_0588	Cytoplasmic, score 8.87	NA
UHGV-0083445_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083445_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0083445_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0083445_5	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0083445_10	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0083445_10	UniRef90	UniRef90_A0A2Z4QA35	Putative radical SAM domain protein	NA
UHGV-0083445_10	eggNOG-mapper	397290.C810_00564	NA	NA
UHGV-0083445_10	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0083445_10	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0083445_11	PHROG	phrog_824	NA	unknown function
UHGV-0083445_11	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0083445_11	eggNOG-mapper	767434.Fraau_0982	VRR-NUC domain	NA
UHGV-0083445_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0083445_12	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0083445_12	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0083445_12	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0083445_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0083445_14	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0083445_14	UniRef90	UniRef90_A0A1Y4W2J0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0083445_14	eggNOG-mapper	903814.ELI_3130	C-5 cytosine-specific DNA methylase	NA
UHGV-0083445_14	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0083445_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0083445_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0083445_14	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0083445_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0083445_15	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0083445_15	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0083445_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083445_16	UniRef90	UniRef90_UPI00164ADA1B	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0083445_16	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-0083445_16	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0083445_17	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0083445_17	UniRef90	UniRef90_UPI001874172A	P27 family phage terminase small subunit	NA
UHGV-0083445_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0083445_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0083445_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083445_18	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0083445_18	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0083445_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083445_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083445_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0083445_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083445_19	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0083445_19	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0083445_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083445_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083445_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083445_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083445_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0083445_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0083445_20	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0083445_20	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0083445_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0083445_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0083445_20	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0083445_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083445_21	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0083445_21	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0083445_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083445_21	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0083445_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083445_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083445_21	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083445_22	PHROG	phrog_749	NA	unknown function
UHGV-0083445_22	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0083445_23	PHROG	phrog_19734	NA	unknown function
UHGV-0083445_23	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0083445_23	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0083445_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083445_24	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0083445_24	Structural annotation	PF05657	NA	NA
UHGV-0083445_25	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0083445_25	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0083445_25	Structural annotation	TIGR01725	NA	NA
UHGV-0083445_26	PHROG	phrog_88	major tail protein	tail
UHGV-0083445_26	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0083445_26	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0083445_26	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0083445_26	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0083445_27	Structural annotation	PF11836	NA	NA
UHGV-0083445_28	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0083445_28	UniRef90	UniRef90_A0A7X8V908	Phage tail protein	NA
UHGV-0083445_28	eggNOG-mapper	431943.CKL_2631	tape measure	NA
UHGV-0083445_28	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0083445_28	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0083445_29	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0083445_29	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0083445_30	PHROG	phrog_13879	NA	unknown function
UHGV-0083445_30	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0083445_31	PHROG	phrog_13879	NA	unknown function
UHGV-0083445_31	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0083445_33	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0083445_33	PHROG	phrog_11157	NA	unknown function
UHGV-0083445_33	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0083445_33	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0083445_33	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0083445_33	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0083445_33	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0083445_33	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0083445_34	PHROG	phrog_18725	NA	unknown function
UHGV-0083445_34	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0083445_34	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0083445_34	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0083445_35	Pfam	PF01079	Hint module	Hint
UHGV-0083445_35	COG	COG3209	NA	NA
UHGV-0083445_36	PHROG	phrog_9428	NA	unknown function
UHGV-0083445_36	UniRef90	UniRef90_A0A316LVP0	Serine/threonine protein kinase	NA
UHGV-0083445_36	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0083445_37	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0083445_37	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0083445_37	Structural annotation	PF14236, MF_02210, NF007025, COG1247	NA	NA
UHGV-0083445_38	PHROG	phrog_1129	holin	lysis
UHGV-0083445_38	UniRef90	UniRef90_A0A316LUD8	Enolase (Fragment)	NA
UHGV-0083445_38	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0083445_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0083445_38	Structural annotation	PF06946	NA	NA
UHGV-0083445_40	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0083445_40	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0083445_40	UniRef90	UniRef90_A0A316LVA9	XRE family transcriptional regulator	NA
UHGV-0083445_40	eggNOG-mapper	138119.DSY3664	sequence-specific DNA binding	NA
UHGV-0083445_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083445_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083445_40	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0083445_41	PHROG	phrog_2523	NA	unknown function
UHGV-0083445_41	UniRef90	UniRef90_A0A316MC14	Addiction module toxin RelE	NA
UHGV-0083445_41	eggNOG-mapper	888060.HMPREF9081_2482	Toxin-antitoxin system, toxin component, RelE family	NA
UHGV-0083445_41	Pfam	PF05973	NA	Gp49
UHGV-0083445_41	COG	COG4679	Phage-related protein	NA
UHGV-0083445_42	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0083445_42	PHROG	phrog_435	endolysin	lysis
UHGV-0083445_42	UniRef90	UniRef90_A0A316LY78	SLH domain-containing protein	NA
UHGV-0083445_42	eggNOG-mapper	1286171.EAL2_808p01900	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083445_42	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0083445_42	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0083445_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083445_43	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0083445_46	eggNOG-mapper	552398.HMPREF0866_01161	NA	NA
UHGV-0083445_47	UniRef90	UniRef90_A0A316LUF4	zinc_ribbon_2 domain-containing protein	NA
UHGV-0083445_47	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0083445_47	COG	COG4640	NA	NA