UHGV-0083512

Genome information

Genome length 25,409 bps

CDS count 39

Completeness 87.24% (medium-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083512
vOTU ID	vOTU-036607
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_141850
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.35
Jumbo phage	No

Genome content
Genome length	25,409 bps
GC content	28.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.38%
Average CDS length	590.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083512_5	KOfam	K03744	lemA; LemA protein	NA
UHGV-0083512_5	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0083512_5	UniRef90	UniRef90_A0A1Q6M2C0	LemA family protein	NA
UHGV-0083512_5	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0083512_5	Pfam	PF04011	LemA family	LemA
UHGV-0083512_5	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0083512_5	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0083512_6	PHROG	phrog_3886	NA	unknown function
UHGV-0083512_6	eggNOG-mapper	1497679.EP56_05675	NA	NA
UHGV-0083512_8	Structural annotation	PF15456	NA	NA
UHGV-0083512_10	PHROG	phrog_709	NA	unknown function
UHGV-0083512_10	Structural annotation	PF11836	NA	NA
UHGV-0083512_13	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083512_13	UniRef90	UniRef90_UPI0009E1F9AD	HNH endonuclease	NA
UHGV-0083512_13	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0083512_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0083512_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083512_14	PHROG	phrog_1066	NA	unknown function
UHGV-0083512_14	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-0083512_14	eggNOG-mapper	411465.PEPMIC_00731	NA	NA
UHGV-0083512_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0083512_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083512_15	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0083512_15	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0083512_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083512_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083512_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083512_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0083512_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083512_16	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-0083512_16	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0083512_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083512_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083512_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083512_17	KOfam	K06904	NA	NA
UHGV-0083512_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0083512_17	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0083512_17	eggNOG-mapper	767817.Desgi_0032	Phage prohead protease, HK97 family	NA
UHGV-0083512_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0083512_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0083512_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0083512_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0083512_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083512_18	UniRef90	UniRef90_A0A843HUX6	Phage major capsid protein	NA
UHGV-0083512_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083512_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083512_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083512_19	PHROG	phrog_5223	neck protein	connector
UHGV-0083512_19	Structural annotation	TIGR01560	NA	NA
UHGV-0083512_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0083512_20	UniRef90	UniRef90_D9SQ11	Prophage pi2 protein	NA
UHGV-0083512_20	eggNOG-mapper	573061.Clocel_2434	head-tail adaptor	NA
UHGV-0083512_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0083512_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0083512_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083512_21	UniRef90	UniRef90_A0A5D4QSP2	HK97 gp10 family phage protein	NA
UHGV-0083512_21	eggNOG-mapper	1145276.T479_12225	NA	NA
UHGV-0083512_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0083512_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0083512_22	PHROG	phrog_78	tail terminator	connector
UHGV-0083512_22	eggNOG-mapper	883112.HMPREF9707_01607	NA	NA
UHGV-0083512_22	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0083512_23	PHROG	phrog_88	major tail protein	tail
UHGV-0083512_23	UniRef90	UniRef90_UPI001CBE6475	phage tail protein	NA
UHGV-0083512_23	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0083512_23	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0083512_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0083512_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0083512_24	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0083512_24	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0083512_24	COG	COG1511	NA	NA
UHGV-0083512_24	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0083512_25	PHROG	phrog_36410	NA	unknown function
UHGV-0083512_25	UniRef90	UniRef90_R5LJU7	Putative phage tail protein	NA
UHGV-0083512_25	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0083512_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0083512_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0083512_25	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0083512_26	PHROG	phrog_538	minor tail protein	tail
UHGV-0083512_26	UniRef90	UniRef90_UPI001EE8FAB7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0083512_26	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0083512_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0083512_26	Structural annotation	PF14594, PF14870, MF_01348, TIGR01665, NF010237, COG4926, COG4447	NA	NA
UHGV-0083512_27	PHROG	phrog_1220	head protein	head and packaging
UHGV-0083512_27	UniRef90	UniRef90_R5M2M1	Conserved domain protein	NA
UHGV-0083512_27	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0083512_27	Structural annotation	PF20747, PF02839	NA	NA
UHGV-0083512_30	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0083512_30	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0083512_32	PHROG	phrog_199	holin	lysis
UHGV-0083512_32	UniRef90	UniRef90_UPI001E4FA8BC	phage holin family protein	NA
UHGV-0083512_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0083512_32	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0083512_32	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0083512_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0083512_34	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0083512_34	PHROG	phrog_670	endolysin	lysis
UHGV-0083512_34	UniRef90	UniRef90_A0A6N8U4Y3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0083512_34	eggNOG-mapper	1117379.BABA_01345	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083512_34	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0083512_34	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0083512_34	Structural annotation	PF01510, PF16775, MF_04111, COG5632	NA	NA
UHGV-0083512_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0083512_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083512_38	UniRef90	UniRef90_R7KER3	Putative transcriptional regulator	NA
UHGV-0083512_38	eggNOG-mapper	646529.Desaci_0363	Helix-turn-helix XRE-family like proteins	NA
UHGV-0083512_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083512_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0083512_39	KOfam	K20344	blpA, lagD; ATP-binding cassette, subfamily C, bacteriocin exporter	NA
UHGV-0083512_39	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0083512_39	UniRef90	UniRef90_R7KCB7	ABC transporter CbaT	NA
UHGV-0083512_39	eggNOG-mapper	224308.BSU21470	Peptidase C39 family	NA
UHGV-0083512_39	Pfam	PF03412	Peptidase C39 family	Peptidase_C39
UHGV-0083512_39	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0083512_39	COG	COG2274	ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain	NA