UHGV-0083574

Genome information

vOTU vOTU-032050

Genome length 24,041 bps

CDS count 44

Completeness 57.48% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083574
vOTU ID	vOTU-032050
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_163158
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.51
Jumbo phage	No

Genome content
Genome length	24,041 bps
GC content	39.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.26%
Average CDS length	503.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083574_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0083574_2	UniRef90	UniRef90_UPI0003FD237D	minor capsid protein	NA
UHGV-0083574_2	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-0083574_2	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0083574_2	Structural annotation	PF11114	NA	NA
UHGV-0083574_3	PHROG	phrog_3366	NA	unknown function
UHGV-0083574_3	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0083574_3	Pfam	PF20536	NA	DUF6751
UHGV-0083574_3	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0083574_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0083574_4	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0083574_5	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0083574_5	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0083574_6	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0083574_6	eggNOG-mapper	1123263.AUKY01000051_gene1081	NA	NA
UHGV-0083574_7	PHROG	phrog_9467	NA	unknown function
UHGV-0083574_7	UniRef90	UniRef90_UPI001C3853B3	Gp49 family protein	NA
UHGV-0083574_7	eggNOG-mapper	1305708.M9Q2I2_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0083574_7	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0083574_7	dbAPIS	APIS043	NA	NA
UHGV-0083574_7	Structural annotation	PF13876	NA	NA
UHGV-0083574_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0083574_9	UniRef90	UniRef90_UPI0015F51ABE	ADP-ribosyltransferase domain-containing protein	NA
UHGV-0083574_9	eggNOG-mapper	428127.EUBDOL_01227	Phage minor capsid protein 2	NA
UHGV-0083574_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0083574_9	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0083574_9	COG	COG2369	NA	NA
UHGV-0083574_9	Structural annotation	PF06152, COG2369	NA	NA
UHGV-0083574_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0083574_10	UniRef90	UniRef90_UPI001C38804D	phage portal protein	NA
UHGV-0083574_10	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-0083574_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083574_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0083574_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083574_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0083574_11	UniRef90	UniRef90_A0A3A6DD41	PBSX family phage terminase large subunit	NA
UHGV-0083574_11	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0083574_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0083574_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0083574_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0083574_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083574_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0083574_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0083574_12	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0083574_12	UniRef90	UniRef90_UPI000E52C41D	terminase small subunit	NA
UHGV-0083574_12	eggNOG-mapper	428127.EUBDOL_01230	terminase (Small subunit)	NA
UHGV-0083574_12	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0083574_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0083574_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0083574_12	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0083574_14	PHROG	phrog_5200	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083574_14	UniRef90	UniRef90_UPI000E4A45C8	HNH endonuclease	NA
UHGV-0083574_14	eggNOG-mapper	515635.Dtur_0346	endonuclease activity	NA
UHGV-0083574_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083574_15	Structural annotation	PF05263, MF_00245, TIGR01636	NA	NA
UHGV-0083574_17	UniRef90	UniRef90_A0A223MTW1	NA	NA
UHGV-0083574_17	Pfam	PF04448	NA	DUF551
UHGV-0083574_17	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0083574_18	Structural annotation	PF18300, MF_00085, NF003076	NA	NA
UHGV-0083574_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083574_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083574_19	UniRef90	UniRef90_UPI001C384F19	single-stranded DNA-binding protein	NA
UHGV-0083574_19	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0083574_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083574_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083574_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083574_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0083574_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0083574_20	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0083574_22	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0083574_23	PHROG	phrog_874	NA	unknown function
UHGV-0083574_23	UniRef90	UniRef90_C4IFC5	Upf86.8	NA
UHGV-0083574_23	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0083574_24	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0083574_24	UniRef90	UniRef90_UPI000E4E4423	class I SAM-dependent methyltransferase	NA
UHGV-0083574_24	eggNOG-mapper	908340.HMPREF9406_3501	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0083574_24	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0083574_24	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0083574_24	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0083574_26	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0083574_26	UniRef90	UniRef90_A0A345BNV3	Putative radical SAM domain protein	NA
UHGV-0083574_26	eggNOG-mapper	908340.HMPREF9406_1085	NA	NA
UHGV-0083574_26	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0083574_26	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0083574_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0083574_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0083574_27	UniRef90	UniRef90_A0A099I637	PAPS_reduct domain-containing protein	NA
UHGV-0083574_27	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0083574_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0083574_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0083574_27	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0083574_28	PHROG	phrog_1163	NA	unknown function
UHGV-0083574_28	UniRef90	UniRef90_UPI000679828C	conserved phage C-terminal domain-containing protein	NA
UHGV-0083574_28	eggNOG-mapper	1449343.JQLQ01000002_gene1358	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0083574_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0083574_28	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0083574_28	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0083574_28	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0083574_28	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-0083574_30	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0083574_30	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0083574_30	Pfam	PF05772	NinB protein	NinB
UHGV-0083574_30	Structural annotation	PF05772	NA	NA
UHGV-0083574_32	PHROG	phrog_7566	NA	unknown function
UHGV-0083574_32	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0083574_32	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0083574_33	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0083574_33	UniRef90	UniRef90_UPI000E4960F1	ERF family protein	NA
UHGV-0083574_33	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0083574_33	Pfam	PF04404	ERF superfamily	ERF
UHGV-0083574_34	PHROG	phrog_674	NA	unknown function
UHGV-0083574_34	UniRef90	UniRef90_UPI000E552643	NA	NA
UHGV-0083574_34	Pfam	PF07083	NA	DUF1351
UHGV-0083574_34	Structural annotation	PF07083	NA	NA
UHGV-0083574_38	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0083574_38	UniRef90	UniRef90_UPI001C389B6A	Rha family transcriptional regulator	NA
UHGV-0083574_38	eggNOG-mapper	278197.PEPE_0752	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0083574_38	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0083574_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0083574_38	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0083574_38	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0083574_38	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0083574_39	PHROG	phrog_2232	NA	unknown function
UHGV-0083574_39	UniRef90	UniRef90_UPI0007DB3CC7	NA	NA
UHGV-0083574_39	eggNOG-mapper	561177.ANHYDRO_01380	NA	NA
UHGV-0083574_39	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0083574_39	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0083574_44	UniRef90	UniRef90_UPI000E49C19D	helix-turn-helix transcriptional regulator	NA