UHGV-0083580

Genome information

Genome length 33,506 bps

CDS count 46

Completeness 88.35% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083580
vOTU ID	vOTU-035524
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_163164
BioSample	SAMEA3136707
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.72
Jumbo phage	No

Genome content
Genome length	33,506 bps
GC content	39.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	96.34%
Average CDS length	705.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083580_1	UniRef90	UniRef90_A0A845N2T1	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0083580_1	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0083580_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0083580_3	PHROG	phrog_11037	NA	unknown function
UHGV-0083580_3	UniRef90	UniRef90_A8RD24	SH3 domain protein	NA
UHGV-0083580_3	eggNOG-mapper	1232449.BAHV02000017_gene1510	NA	NA
UHGV-0083580_3	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0083580_4	PHROG	phrog_4105	NA	unknown function
UHGV-0083580_4	eggNOG-mapper	1232449.BAHV02000016_gene1808	NA	NA
UHGV-0083580_5	PHROG	phrog_36029	NA	unknown function
UHGV-0083580_5	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0083580_5	eggNOG-mapper	1232449.BAHV02000016_gene1809	NA	NA
UHGV-0083580_5	Structural annotation	PF09682	NA	NA
UHGV-0083580_6	PHROG	phrog_774	NA	unknown function
UHGV-0083580_6	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0083580_13	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0083580_13	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0083580_13	Structural annotation	PF21722	NA	NA
UHGV-0083580_14	PHROG	phrog_1419	tail protein	tail
UHGV-0083580_14	eggNOG-mapper	1232449.BAHV02000016_gene1815	NA	NA
UHGV-0083580_15	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0083580_15	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0083580_15	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0083580_16	PHROG	phrog_13046	NA	unknown function
UHGV-0083580_16	eggNOG-mapper	1232449.BAHV02000016_gene1817	NA	NA
UHGV-0083580_16	Structural annotation	PF20387	NA	NA
UHGV-0083580_17	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0083580_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-0083580_18	UniRef90	UniRef90_UPI001CF3AF07	P22 coat protein - protein 5 domain protein	NA
UHGV-0083580_18	eggNOG-mapper	1232449.BAHV02000016_gene1819	P22 coat protein-protein 5 domain protein	NA
UHGV-0083580_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0083580_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0083580_20	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0083580_20	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0083580_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083580_22	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0083580_22	UniRef90	UniRef90_A0A0M2NDA4	Phage terminase, large subunit	NA
UHGV-0083580_22	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0083580_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0083580_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083580_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0083580_23	eggNOG-mapper	1536774.H70357_24570	NA	NA
UHGV-0083580_23	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0083580_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083580_25	AcrCatalog	cluster_71904	NA	NA
UHGV-0083580_26	PHROG	phrog_419	NA	unknown function
UHGV-0083580_26	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0083580_26	eggNOG-mapper	1232449.BAHV02000016_gene1828	NA	NA
UHGV-0083580_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0083580_28	UniRef90	UniRef90_A0A412G6G0	Class I SAM-dependent methyltransferase	NA
UHGV-0083580_28	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0083580_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0083580_28	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0083580_28	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0083580_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0083580_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0083580_30	UniRef90	UniRef90_R5BHM3	Cytosine-specific methyltransferase	NA
UHGV-0083580_30	eggNOG-mapper	1232449.BAHV02000016_gene1830	Cytosine-specific methyltransferase	NA
UHGV-0083580_30	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0083580_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0083580_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0083580_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0083580_30	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0083580_32	PHROG	phrog_874	NA	unknown function
UHGV-0083580_32	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-0083580_32	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-0083580_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0083580_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0083580_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0083580_35	UniRef90	UniRef90_A0A223MJF7	DNA helicase	NA
UHGV-0083580_35	eggNOG-mapper	1232449.BAHV02000016_gene1835	Participates in initiation and elongation during chromosome replication	NA
UHGV-0083580_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0083580_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0083580_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0083580_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0083580_36	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0083580_36	UniRef90	UniRef90_A0A374US31	NA	NA
UHGV-0083580_36	eggNOG-mapper	1232449.BAHV02000016_gene1836	NA	NA
UHGV-0083580_36	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0083580_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0083580_36	Structural annotation	PF14297	NA	NA
UHGV-0083580_37	PHROG	phrog_2113	NA	unknown function
UHGV-0083580_37	eggNOG-mapper	1298920.KI911353_gene2059	NA	NA
UHGV-0083580_37	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0083580_38	PHROG	phrog_1029	NA	unknown function
UHGV-0083580_38	UniRef90	UniRef90_T0TFF0	NA	NA
UHGV-0083580_38	eggNOG-mapper	1232449.BAHV02000016_gene1838	NA	NA
UHGV-0083580_38	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0083580_39	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0083580_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0083580_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0083580_40	UniRef90	UniRef90_A0A415T7N0	Integrase	NA
UHGV-0083580_40	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0083580_40	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0083580_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083580_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0083580_40	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0083580_41	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083580_41	UniRef90	UniRef90_UPI00082FB90B	HNH endonuclease	NA
UHGV-0083580_41	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0083580_43	UniRef90	UniRef90_A0A318KKH9	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0083580_43	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase