UHGV-0083613

Genome information

Genome length 27,585 bps

CDS count 44

Completeness 62.86% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083613
vOTU ID	vOTU-017517
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_139743
BioSample	SAMEA2737690
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.66
Jumbo phage	No

Genome content
Genome length	27,585 bps
GC content	49.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	86.98%
Average CDS length	548.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083613_1	UniRef90	UniRef90_B5XVV5	Conserved domain protein	NA
UHGV-0083613_1	eggNOG-mapper	573.JG24_18150	NA	NA
UHGV-0083613_2	UniRef90	UniRef90_A0A087FQD6	Cupin fold metalloprotein, WbuC family	NA
UHGV-0083613_2	eggNOG-mapper	573.JG24_18145	Cupin 2, conserved barrel domain protein	NA
UHGV-0083613_2	Pfam	PF19480	NA	DUF6016
UHGV-0083613_2	NCBIFam	TIGR04366.1	WbuC family cupin fold metalloprotein	NA
UHGV-0083613_2	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0083613_3	KOfam	K14059	int; integrase	NA
UHGV-0083613_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0083613_3	UniRef90	UniRef90_A0A2Z2FBU9	Integrase	NA
UHGV-0083613_3	eggNOG-mapper	640513.Entas_3109	Belongs to the 'phage' integrase family	NA
UHGV-0083613_3	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0083613_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083613_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083613_3	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0083613_4	PHROG	phrog_33798	NA	unknown function
UHGV-0083613_4	UniRef90	UniRef90_A0A431SE77	DNA-binding protein	NA
UHGV-0083613_4	eggNOG-mapper	866553.G3CFG7_9CAUD	NA	NA
UHGV-0083613_4	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0083613_5	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0083613_5	PHROG	phrog_14078	NA	unknown function
UHGV-0083613_5	UniRef90	UniRef90_A0A422ZBS5	3'-5' exoribonuclease	NA
UHGV-0083613_5	eggNOG-mapper	640513.Entas_3107	3' exoribonuclease, RNase T-like	NA
UHGV-0083613_5	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-0083613_5	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0083613_5	Structural annotation	PF16473, MF_00157, NF005289, COG0847	NA	NA
UHGV-0083613_7	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0083613_7	UniRef90	UniRef90_UPI001083B6F7	DNA cytosine methyltransferase	NA
UHGV-0083613_7	eggNOG-mapper	255431.Q6UAU0_9CAUD	methyltransferase activity	NA
UHGV-0083613_7	Structural annotation	PF03686, NF008872, COG1255	NA	NA
UHGV-0083613_8	PHROG	phrog_4838	NA	unknown function
UHGV-0083613_8	UniRef90	UniRef90_UPI000695AB9F	ead/Ea22-like family protein	NA
UHGV-0083613_9	PHROG	phrog_11067	NA	unknown function
UHGV-0083613_9	eggNOG-mapper	35703.DQ02_13705	NA	NA
UHGV-0083613_10	UniRef90	UniRef90_A0A422ZBQ3	Integrase	NA
UHGV-0083613_11	Structural annotation	PF14354, TIGR04203	NA	NA
UHGV-0083613_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0083613_12	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0083613_12	UniRef90	UniRef90_A0A7Z7SCW6	DNA-binding plasmid partitioning protein	NA
UHGV-0083613_12	eggNOG-mapper	640513.Entas_3103	DNA binding	NA
UHGV-0083613_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0083613_12	Structural annotation	PF02195, PF08535, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0083613_13	PHROG	phrog_210	NA	unknown function
UHGV-0083613_13	UniRef90	UniRef90_A0A8F4G268	YfdQ family protein	NA
UHGV-0083613_13	eggNOG-mapper	640513.Entas_3102	NA	NA
UHGV-0083613_13	Pfam	PF10065	NA	DUF2303
UHGV-0083613_13	COG	COG5532	NA	NA
UHGV-0083613_13	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0083613_14	PHROG	phrog_204	NA	unknown function
UHGV-0083613_14	eggNOG-mapper	640513.Entas_3101	NA	NA
UHGV-0083613_16	PHROG	phrog_3975	NA	unknown function
UHGV-0083613_16	eggNOG-mapper	592316.Pat9b_2150	NA	NA
UHGV-0083613_16	Structural annotation	PF10798, NF040640	NA	NA
UHGV-0083613_17	PHROG	phrog_6191	NA	unknown function
UHGV-0083613_17	eggNOG-mapper	1524467.IV04_21410	NA	NA
UHGV-0083613_17	Structural annotation	PF12857, NF009730, COG5569	NA	NA
UHGV-0083613_18	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0083613_18	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0083613_18	UniRef90	UniRef90_A0A6D1RVG7	XRE family transcriptional regulator	NA
UHGV-0083613_18	eggNOG-mapper	906669.G8C7U1_9CAUD	sequence-specific DNA binding	NA
UHGV-0083613_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083613_18	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0083613_18	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0083613_19	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0083613_19	UniRef90	UniRef90_A0A8F6ZG48	Helix-turn-helix domain-containing protein	NA
UHGV-0083613_19	eggNOG-mapper	1443113.LC20_00469	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0083613_19	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0083613_19	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0083613_19	Structural annotation	PF15943, COG4197	NA	NA
UHGV-0083613_20	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0083613_20	UniRef90	UniRef90_A0A241Q8J6	DNA-binding protein	NA
UHGV-0083613_20	eggNOG-mapper	1440052.EAKF1_ch1778c	NA	NA
UHGV-0083613_20	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0083613_21	PHROG	phrog_852	NA	unknown function
UHGV-0083613_21	eggNOG-mapper	640513.Entas_3096	NA	NA
UHGV-0083613_22	PHROG	phrog_1492	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083613_22	UniRef90	UniRef90_A0A2I8S9F0	NUMOD4 domain-containing protein	NA
UHGV-0083613_22	eggNOG-mapper	1224136.AMFN01000003_gene3640	HNH endonuclease	NA
UHGV-0083613_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0083613_23	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0083613_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0083613_23	UniRef90	UniRef90_A0A7W3CZQ5	DEAD/DEAH box helicase	NA
UHGV-0083613_23	eggNOG-mapper	640513.Entas_3094	helicase	NA
UHGV-0083613_23	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0083613_23	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0083613_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0083613_23	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0083613_23	Structural annotation	PF07652, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0083613_24	PHROG	phrog_510	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0083613_24	UniRef90	UniRef90_A0A212I3G5	Prim_Zn_Ribbon domain-containing protein	NA
UHGV-0083613_24	eggNOG-mapper	640513.Entas_3093	Zinc-binding domain of primase-helicase	NA
UHGV-0083613_24	Pfam	PF08273	Zinc-binding domain of primase-helicase	Prim_Zn_Ribbon
UHGV-0083613_24	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0083613_24	COG	COG4643	NA	NA
UHGV-0083613_24	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-0083613_25	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083613_25	UniRef90	UniRef90_A0A7Z7SEX8	Bacteriophage Lambda NinG protein	NA
UHGV-0083613_25	eggNOG-mapper	640513.Entas_3092	endonuclease activity	NA
UHGV-0083613_25	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0083613_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083613_25	Structural annotation	PF05766	NA	NA
UHGV-0083613_26	PHROG	phrog_3496	NA	unknown function
UHGV-0083613_27	KOfam	K24174	METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]	NA
UHGV-0083613_27	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0083613_27	UniRef90	UniRef90_A0A377Y574	MT-A70 family protein	NA
UHGV-0083613_27	eggNOG-mapper	640513.Entas_3091	Belongs to the MT-A70-like family	NA
UHGV-0083613_27	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0083613_27	Pfam	PF05063	MT-A70	MT-A70
UHGV-0083613_27	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0083613_27	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0083613_28	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0083613_28	UniRef90	UniRef90_A0A198GFI1	Phage antitermination protein Q	NA
UHGV-0083613_28	eggNOG-mapper	640513.Entas_3090	Antitermination protein Q	NA
UHGV-0083613_28	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0083613_28	Structural annotation	PF06530, MF_00245, TIGR02999, COG2739	NA	NA
UHGV-0083613_29	PHROG	phrog_198	holin	lysis
UHGV-0083613_29	UniRef90	UniRef90_A0A0J2A5L5	Membrane protein	NA
UHGV-0083613_29	eggNOG-mapper	754331.AEME01000001_gene4288	Putative phage holin	NA
UHGV-0083613_29	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0083613_29	Structural annotation	PF16931	NA	NA
UHGV-0083613_30	PHROG	phrog_217	holin	lysis
UHGV-0083613_30	UniRef90	UniRef90_A0A2L0KQV5	Membrane protein	NA
UHGV-0083613_30	eggNOG-mapper	469595.CSAG_00950	Putative 3TM holin, Phage_holin_3	NA
UHGV-0083613_30	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0083613_31	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0083613_31	PHROG	phrog_181	endolysin	lysis
UHGV-0083613_31	UniRef90	UniRef90_A0A565EXJ4	Glyco_hydro_19_cat domain-containing protein	NA
UHGV-0083613_31	eggNOG-mapper	573.JG24_10935	PFAM glycoside hydrolase family 19	NA
UHGV-0083613_31	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0083613_31	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0083613_31	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0083613_32	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0083613_32	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0083613_33	PHROG	phrog_9518	NA	unknown function
UHGV-0083613_33	UniRef90	UniRef90_Q6D0R8	Phage-related protein	NA
UHGV-0083613_33	eggNOG-mapper	218491.ECA3731	NA	NA
UHGV-0083613_34	PHROG	phrog_571	NA	unknown function
UHGV-0083613_34	UniRef90	UniRef90_UPI000EAE7CD1	NA	NA
UHGV-0083613_34	eggNOG-mapper	573.JG24_10960	NA	NA
UHGV-0083613_34	Pfam	PF10834	NA	DUF2560
UHGV-0083613_34	Structural annotation	PF10834	NA	NA
UHGV-0083613_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0083613_35	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083613_35	UniRef90	UniRef90_A0A377Z6P6	DNAse	NA
UHGV-0083613_35	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0083613_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0083613_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083613_35	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0083613_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0083613_36	UniRef90	UniRef90_A0A2I8XQZ3	Phage terminase small subunit P27 family	NA
UHGV-0083613_36	eggNOG-mapper	1524467.IV04_14600	Phage terminase, small subunit	NA
UHGV-0083613_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0083613_36	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0083613_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0083613_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0083613_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083613_37	UniRef90	UniRef90_E6WKD3	Terminase	NA
UHGV-0083613_37	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-0083613_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083613_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083613_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083613_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0083613_38	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0083613_38	UniRef90	UniRef90_A0A376KNN8	NA	NA
UHGV-0083613_38	eggNOG-mapper	90371.CY43_10640	NA	NA
UHGV-0083613_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083613_39	UniRef90	UniRef90_A0A237PU11	Phage portal protein	NA
UHGV-0083613_39	eggNOG-mapper	640513.Entas_3080	TIGRFAM Phage portal protein, HK97	NA
UHGV-0083613_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083613_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083613_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083613_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083613_40	KOfam	K06904	NA	NA
UHGV-0083613_40	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0083613_40	UniRef90	UniRef90_UPI00129CC7C8	HK97 family phage prohead protease	NA
UHGV-0083613_40	eggNOG-mapper	640513.Entas_3079	Caudovirus prohead serine protease	NA
UHGV-0083613_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0083613_40	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0083613_40	COG	COG3740	Phage head maturation protease	NA
UHGV-0083613_40	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0083613_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083613_41	UniRef90	UniRef90_E6WKD7	Phage major capsid protein, HK97 family	NA
UHGV-0083613_41	eggNOG-mapper	640513.Entas_3078	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0083613_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083613_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083613_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083613_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083613_42	PHROG	phrog_21989	NA	unknown function
UHGV-0083613_42	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-0083613_42	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-0083613_43	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0083613_43	UniRef90	UniRef90_A0A859X296	Phage gp6-like head-tail connector protein	NA
UHGV-0083613_43	eggNOG-mapper	640513.Entas_3076	Phage gp6-like head-tail connector protein	NA
UHGV-0083613_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0083613_43	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0083613_43	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0083613_44	PHROG	phrog_25	head closure Hc1	connector
UHGV-0083613_44	UniRef90	UniRef90_A0A170RNN6	Head-tail adaptor protein	NA
UHGV-0083613_44	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0083613_44	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0083613_44	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0083613_44	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0083613_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA