UHGV-0083733

Genome information

Genome length 52,881 bps

CDS count 86

Completeness 91.91% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083733
vOTU ID	vOTU-061038
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151323
BioSample	SAMEA2784459
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.69
Jumbo phage	No

Genome content
Genome length	52,881 bps
GC content	36.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	89.17%
Average CDS length	551.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083733_1	eggNOG-mapper	658655.HMPREF0988_00920	NA	NA
UHGV-0083733_2	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0083733_2	Structural annotation	NF033819	NA	NA
UHGV-0083733_3	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0083733_4	PHROG	phrog_16490	NA	unknown function
UHGV-0083733_4	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0083733_5	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-0083733_6	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0083733_7	UniRef90	UniRef90_A0A373M343	Zinc-ribbon domain-containing protein	NA
UHGV-0083733_7	Structural annotation	PF12729	NA	NA
UHGV-0083733_10	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0083733_10	PHROG	phrog_216	integrase	integration and excision
UHGV-0083733_10	UniRef90	UniRef90_A0A3D5WQF7	Integrase	NA
UHGV-0083733_10	eggNOG-mapper	357809.Cphy_2102	Phage integrase family	NA
UHGV-0083733_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083733_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083733_10	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0083733_15	UniRef90	UniRef90_A0A8D9PGX6	Histidine triad protein	NA
UHGV-0083733_15	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0083733_20	PHROG	phrog_31631	NA	unknown function
UHGV-0083733_21	UniRef90	UniRef90_UPI00156E5158	helix-turn-helix domain-containing protein	NA
UHGV-0083733_21	eggNOG-mapper	1461580.CCAS010000078_gene4207	NA	NA
UHGV-0083733_22	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0083733_23	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0083733_30	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0083733_30	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0083733_30	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0083733_31	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0083733_31	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0083733_31	eggNOG-mapper	314275.MADE_1014625	Terminase-like family	NA
UHGV-0083733_31	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0083733_31	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0083733_31	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-0083733_31	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0083733_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083733_32	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0083733_32	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0083733_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0083733_32	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0083733_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0083733_33	UniRef90	UniRef90_A0A4Q5C6V0	Phage portal protein	NA
UHGV-0083733_33	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0083733_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083733_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0083733_34	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0083733_35	PHROG	phrog_909	major head protein	head and packaging
UHGV-0083733_35	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0083733_36	PHROG	phrog_29	major head protein	head and packaging
UHGV-0083733_36	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0083733_36	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0083733_36	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0083733_36	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0083733_37	Structural annotation	PF21169	NA	NA
UHGV-0083733_38	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0083733_39	PHROG	phrog_1863	NA	unknown function
UHGV-0083733_39	eggNOG-mapper	1499683.CCFF01000014_gene3893	NA	NA
UHGV-0083733_40	PHROG	phrog_1129	holin	lysis
UHGV-0083733_40	UniRef90	UniRef90_UPI000CFA463C	phage holin family protein	NA
UHGV-0083733_40	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0083733_40	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0083733_40	Structural annotation	PF16079	NA	NA
UHGV-0083733_41	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0083733_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0083733_42	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0083733_43	Structural annotation	PF05657	NA	NA
UHGV-0083733_44	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0083733_44	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0083733_47	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0083733_47	PHROG	phrog_2649	endolysin	lysis
UHGV-0083733_47	UniRef90	UniRef90_R6DUN0	Peptidase_M15_4 domain-containing protein	NA
UHGV-0083733_47	eggNOG-mapper	411902.CLOBOL_06235	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0083733_47	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0083733_47	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0083733_47	Structural annotation	PF02557, MF_01924, NF000472, COG1876	NA	NA
UHGV-0083733_48	PHROG	phrog_28918	NA	unknown function
UHGV-0083733_48	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0083733_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0083733_49	PHROG	phrog_1194	NA	unknown function
UHGV-0083733_49	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-0083733_50	PHROG	phrog_16267	NA	unknown function
UHGV-0083733_50	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0083733_50	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0083733_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083733_53	UniRef90	UniRef90_A0A412SB20	XRE family transcriptional regulator	NA
UHGV-0083733_53	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0083733_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0083733_53	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0083733_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083733_54	UniRef90	UniRef90_A0A3R6TRW8	XRE family transcriptional regulator	NA
UHGV-0083733_54	eggNOG-mapper	655812.HMPREF0061_0222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0083733_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083733_54	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0083733_55	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0083733_55	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0083733_55	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0083733_55	eggNOG-mapper	445971.ANASTE_00714	BRO family, N-terminal domain	NA
UHGV-0083733_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0083733_55	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0083733_55	COG	COG3617	Prophage antirepressor	NA
UHGV-0083733_55	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0083733_56	PHROG	phrog_22529	NA	unknown function
UHGV-0083733_56	UniRef90	UniRef90_A0A7X8W5H4	3D domain-containing protein	NA
UHGV-0083733_56	eggNOG-mapper	877420.ATVW01000029_gene1358	3D domain	NA
UHGV-0083733_56	Pfam	PF06725	3D domain	3D
UHGV-0083733_56	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0083733_56	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0083733_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083733_58	PHROG	phrog_26861	NA	unknown function
UHGV-0083733_58	UniRef90	UniRef90_A0A410PU66	Single-stranded DNA-binding protein	NA
UHGV-0083733_58	eggNOG-mapper	397290.C810_01452	Single-strand binding protein family	NA
UHGV-0083733_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083733_58	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0083733_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083733_58	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0083733_60	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0083733_60	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0083733_60	UniRef90	UniRef90_A0A011UJY5	NA	NA
UHGV-0083733_60	eggNOG-mapper	32024.JMTI01000026_gene1431	NA	NA
UHGV-0083733_60	Pfam	PF12684	NA	DUF3799
UHGV-0083733_60	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0083733_63	PHROG	phrog_3657	NA	unknown function
UHGV-0083733_63	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0083733_64	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083733_64	UniRef90	UniRef90_A0A843IZP9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0083733_64	eggNOG-mapper	997350.HMPREF9129_1668	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0083733_64	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0083733_64	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0083733_65	PHROG	phrog_25456	NA	unknown function
UHGV-0083733_66	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083733_66	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083733_66	UniRef90	UniRef90_A0A1Q6KA57	Single-stranded DNA-binding protein	NA
UHGV-0083733_66	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0083733_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083733_66	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083733_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083733_66	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0083733_67	PHROG	phrog_1163	NA	unknown function
UHGV-0083733_67	UniRef90	UniRef90_UPI001D0BCA6A	conserved phage C-terminal domain-containing protein	NA
UHGV-0083733_67	eggNOG-mapper	324831.LGAS_0583	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0083733_67	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0083733_67	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0083733_67	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0083733_67	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0083733_68	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0083733_68	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0083733_68	UniRef90	UniRef90_R9KLJ0	ATPase domain-containing protein	NA
UHGV-0083733_68	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0083733_68	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0083733_68	COG	COG0305	Replicative DNA helicase	NA
UHGV-0083733_68	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0083733_70	PHROG	phrog_9958	NA	unknown function
UHGV-0083733_70	UniRef90	UniRef90_R5L718	NA	NA
UHGV-0083733_70	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-0083733_70	Structural annotation	PF19789	NA	NA
UHGV-0083733_71	PHROG	phrog_9958	NA	unknown function
UHGV-0083733_71	UniRef90	UniRef90_A0A4Q5C6P1	NA	NA
UHGV-0083733_71	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0083733_71	Pfam	PF19789	NA	DUF6273
UHGV-0083733_71	Structural annotation	PF19789	NA	NA
UHGV-0083733_72	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0083733_72	UniRef90	UniRef90_UPI00189799E8	four helix bundle protein	NA
UHGV-0083733_72	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0083733_72	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0083733_72	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0083733_73	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0083733_73	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0083733_73	UniRef90	UniRef90_A0A4Q5C974	Reverse transcriptase domain-containing protein	NA
UHGV-0083733_73	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0083733_73	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0083733_73	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0083733_73	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0083733_73	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0083733_78	PHROG	phrog_23490	NA	unknown function
UHGV-0083733_78	UniRef90	UniRef90_UPI0019D6D15B	NA	NA
UHGV-0083733_78	eggNOG-mapper	1122918.KB907248_gene4513	NA	NA
UHGV-0083733_80	PHROG	phrog_8684	NA	unknown function
UHGV-0083733_80	UniRef90	UniRef90_C7GC23	YopX domain-containing protein	NA
UHGV-0083733_80	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0083733_80	Pfam	PF09643	YopX protein	YopX
UHGV-0083733_80	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0083733_80	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0083733_81	PHROG	phrog_10714	NA	unknown function
UHGV-0083733_81	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0083733_82	PHROG	phrog_15198	NA	unknown function
UHGV-0083733_82	Pfam	PF04448	NA	DUF551
UHGV-0083733_85	UniRef90	UniRef90_A0A8D9UJ07	Restriction endonuclease	NA