UHGV-0083777

Genome information

Genome length 40,130 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083777
vOTU ID	vOTU-055701
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_142699
BioSample	SAMEA2737880
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.37
Jumbo phage	No

Genome content
Genome length	40,130 bps
GC content	50.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	88.57%
Average CDS length	526.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083777_1	PHROG	phrog_27197	NA	unknown function
UHGV-0083777_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0083777_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0083777_4	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0083777_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0083777_5	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0083777_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0083777_5	Structural annotation	PF05772	NA	NA
UHGV-0083777_6	PHROG	phrog_7566	NA	unknown function
UHGV-0083777_6	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0083777_7	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0083777_7	eggNOG-mapper	1123314.AUIO01000007_gene496	NA	NA
UHGV-0083777_7	Pfam	PF19808	NA	DUF6291
UHGV-0083777_7	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0083777_7	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0083777_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0083777_7	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0083777_8	PHROG	phrog_9804	NA	unknown function
UHGV-0083777_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0083777_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0083777_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0083777_9	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0083777_9	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0083777_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0083777_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0083777_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0083777_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0083777_9	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0083777_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0083777_12	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083777_12	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0083777_12	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0083777_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0083777_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0083777_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0083777_17	Structural annotation	NF007260	NA	NA
UHGV-0083777_18	PHROG	phrog_9958	NA	unknown function
UHGV-0083777_18	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0083777_18	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0083777_18	Structural annotation	PF19789	NA	NA
UHGV-0083777_19	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0083777_19	UniRef90	UniRef90_A0A7C2NFZ4	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0083777_19	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-0083777_19	Pfam	PF04448	NA	DUF551
UHGV-0083777_19	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0083777_19	Structural annotation	NF041588	NA	NA
UHGV-0083777_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083777_20	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0083777_20	Pfam	PF07374	NA	DUF1492
UHGV-0083777_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0083777_20	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0083777_21	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0083777_21	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0083777_21	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0083777_21	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0083777_21	Structural annotation	PF16677	NA	NA
UHGV-0083777_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083777_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0083777_22	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0083777_22	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0083777_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0083777_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0083777_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0083777_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083777_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0083777_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0083777_23	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0083777_23	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0083777_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083777_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0083777_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0083777_24	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0083777_24	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0083777_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0083777_24	COG	COG2369	NA	NA
UHGV-0083777_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0083777_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083777_25	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0083777_25	eggNOG-mapper	764299.STRIC_1434	NA	NA
UHGV-0083777_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0083777_26	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0083777_26	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0083777_26	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0083777_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0083777_27	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0083777_27	eggNOG-mapper	320843.Q4ZBR6_9CAUD	Phage minor structural protein GP20	NA
UHGV-0083777_27	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0083777_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-0083777_28	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0083777_28	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0083777_28	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0083777_28	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0083777_30	PHROG	phrog_17977	NA	unknown function
UHGV-0083777_30	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0083777_30	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0083777_31	Structural annotation	PF11367	NA	NA
UHGV-0083777_32	PHROG	phrog_885	major tail protein	tail
UHGV-0083777_32	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0083777_32	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0083777_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0083777_33	PHROG	phrog_18646	NA	unknown function
UHGV-0083777_35	PHROG	phrog_20920	NA	unknown function
UHGV-0083777_35	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0083777_35	Structural annotation	PF16674	NA	NA
UHGV-0083777_36	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0083777_36	UniRef90	UniRef90_A0A0R1K502	Phage tape measure protein	NA
UHGV-0083777_36	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0083777_36	COG	COG5283	Phage-related tail protein	NA
UHGV-0083777_36	Structural annotation	PF20155	NA	NA
UHGV-0083777_37	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083777_37	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-0083777_37	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0083777_37	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0083777_37	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0083777_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0083777_38	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0083777_38	UniRef90	UniRef90_A0A1S5SAD9	Tail tape measure protein	NA
UHGV-0083777_38	eggNOG-mapper	545697.HMPREF0216_02861	tail tape measure protein	NA
UHGV-0083777_38	COG	COG5283	Phage-related tail protein	NA
UHGV-0083777_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0083777_39	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0083777_39	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0083777_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0083777_39	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0083777_40	PHROG	phrog_538	minor tail protein	tail
UHGV-0083777_40	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0083777_40	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0083777_40	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0083777_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0083777_41	PHROG	phrog_9534	head protein	head and packaging
UHGV-0083777_41	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0083777_41	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0083777_44	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0083777_44	Structural annotation	NF040910	NA	NA
UHGV-0083777_45	PHROG	phrog_17147	NA	unknown function
UHGV-0083777_45	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0083777_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0083777_48	PHROG	phrog_291	endolysin	lysis
UHGV-0083777_48	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0083777_48	eggNOG-mapper	665956.HMPREF1032_02928	NA	NA
UHGV-0083777_48	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0083777_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0083777_48	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0083777_49	eggNOG-mapper	97138.C820_00591	NA	NA
UHGV-0083777_50	PHROG	phrog_13256	NA	unknown function
UHGV-0083777_50	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0083777_51	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0083777_51	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0083777_51	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0083777_52	PHROG	phrog_3754	NA	unknown function
UHGV-0083777_52	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0083777_53	PHROG	phrog_21718	NA	unknown function
UHGV-0083777_53	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0083777_54	PHROG	phrog_22984	NA	unknown function
UHGV-0083777_55	PHROG	phrog_16490	NA	unknown function
UHGV-0083777_55	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0083777_56	PHROG	phrog_20016	NA	unknown function
UHGV-0083777_56	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0083777_56	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0083777_56	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0083777_57	Structural annotation	PF12510	NA	NA
UHGV-0083777_58	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0083777_60	KOfam	K14059	int; integrase	NA
UHGV-0083777_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0083777_60	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0083777_60	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0083777_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083777_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083777_60	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0083777_61	UniRef90	UniRef90_UPI001F46B012	SAP domain-containing protein	NA
UHGV-0083777_61	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0083777_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083777_63	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0083777_63	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0083777_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083777_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083777_63	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0083777_64	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0083777_66	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0083777_66	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0083777_68	PHROG	phrog_4433	NA	unknown function
UHGV-0083777_68	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0083777_68	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0083777_68	COG	COG5164	Transcription elongation factor SPT5	NA