UHGV-0083785

Genome information

Genome length 56,502 bps

CDS count 84

Completeness 99.77% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083785
vOTU ID	vOTU-010778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_150621
BioSample	SAMEA2784461
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-5.72
Jumbo phage	No

Genome content
Genome length	56,502 bps
GC content	38.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	84
CDS density	95.43%
Average CDS length	645.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083785_1	KOfam	K12257	secDF; SecD/SecF fusion protein	NA
UHGV-0083785_1	UniRef90	UniRef90_A0A1C6J8S5	Multifunctional fusion protein	NA
UHGV-0083785_1	eggNOG-mapper	471870.BACINT_01612	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	NA
UHGV-0083785_1	Pfam	PF21760	Protein translocase subunit SecDF, P1 domain, N-terminal	SecD_1st
UHGV-0083785_1	Pfam	PF03176	MMPL family	MMPL
UHGV-0083785_1	Pfam	PF07549	SecD/SecF GG Motif	Sec_GG
UHGV-0083785_1	Pfam	PF02355	Protein export membrane protein	SecD_SecF
UHGV-0083785_1	NCBIFam	NF009585.0	protein translocase subunit SecDF	NA
UHGV-0083785_1	COG	COG0341	Preprotein translocase subunit SecF	NA
UHGV-0083785_1	HAMAP	MF_01463_B	Protein translocase subunit SecD [secD]	NA
UHGV-0083785_1	Structural annotation	PF02460, MF_01463_B, MF_01464_B, NF009585, COG0342, COG0341	NA	NA
UHGV-0083785_2	PHROG	phrog_14010	NA	unknown function
UHGV-0083785_2	eggNOG-mapper	1235788.C802_00118	NA	NA
UHGV-0083785_2	Pfam	PF20186	NA	DUF6549
UHGV-0083785_2	Structural annotation	PF20186	NA	NA
UHGV-0083785_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0083785_3	PHROG	phrog_435	endolysin	lysis
UHGV-0083785_3	UniRef90	UniRef90_A0A7J4XN43	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083785_3	eggNOG-mapper	1121098.HMPREF1534_01106	COG NOG32858 non supervised orthologous group	NA
UHGV-0083785_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0083785_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0083785_3	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0083785_4	PHROG	phrog_19698	NA	unknown function
UHGV-0083785_4	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-0083785_5	PHROG	phrog_17180	NA	unknown function
UHGV-0083785_5	eggNOG-mapper	1235788.C802_00115	NA	NA
UHGV-0083785_6	PHROG	phrog_15074	NA	unknown function
UHGV-0083785_6	UniRef90	UniRef90_UPI001D0F7F79	tail fiber domain-containing protein	NA
UHGV-0083785_6	eggNOG-mapper	1235788.C802_00114	Phage minor structural protein	NA
UHGV-0083785_6	COG	COG4926	Phage-related protein	NA
UHGV-0083785_6	Structural annotation	PF14594, PF13385, PF21567, TIGR01665, COG4926	NA	NA
UHGV-0083785_7	PHROG	phrog_19665	NA	unknown function
UHGV-0083785_7	eggNOG-mapper	172045.KS04_18425	NA	NA
UHGV-0083785_8	PHROG	phrog_11557	NA	unknown function
UHGV-0083785_8	eggNOG-mapper	1235788.C802_00112	NA	NA
UHGV-0083785_9	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0083785_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0083785_9	UniRef90	UniRef90_I9U839	Reverse transcriptase domain-containing protein	NA
UHGV-0083785_9	eggNOG-mapper	1235788.C802_00111	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0083785_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0083785_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0083785_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0083785_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0083785_10	PHROG	phrog_5302	tail protein	tail
UHGV-0083785_10	eggNOG-mapper	1235788.C802_00109	NA	NA
UHGV-0083785_10	Structural annotation	PF03781, COG1262	NA	NA
UHGV-0083785_11	PHROG	phrog_20680	NA	unknown function
UHGV-0083785_11	eggNOG-mapper	1235788.C802_00108	NA	NA
UHGV-0083785_11	Structural annotation	PF02368	NA	NA
UHGV-0083785_12	PHROG	phrog_19280	NA	unknown function
UHGV-0083785_12	eggNOG-mapper	1235788.C802_00107	domain, Protein	NA
UHGV-0083785_12	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0083785_13	PHROG	phrog_6305	tail protein	tail
UHGV-0083785_13	eggNOG-mapper	1235788.C802_00106	NA	NA
UHGV-0083785_13	Structural annotation	PF05709, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0083785_14	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0083785_14	UniRef90	UniRef90_A0A7J4XN53	Tape measure protein	NA
UHGV-0083785_14	eggNOG-mapper	1235788.C802_00105	NA	NA
UHGV-0083785_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0083785_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0083785_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083785_14	Structural annotation	PF20155	NA	NA
UHGV-0083785_15	PHROG	phrog_25685	NA	unknown function
UHGV-0083785_16	PHROG	phrog_12247	NA	unknown function
UHGV-0083785_16	eggNOG-mapper	1235788.C802_00104	NA	NA
UHGV-0083785_17	PHROG	phrog_17745	NA	unknown function
UHGV-0083785_17	UniRef90	UniRef90_UPI000E49EB53	BACON domain-containing protein	NA
UHGV-0083785_17	eggNOG-mapper	1235788.C802_00103	NA	NA
UHGV-0083785_17	Structural annotation	PF06199, TIGR01603, COG5437	NA	NA
UHGV-0083785_18	PHROG	phrog_5597	NA	unknown function
UHGV-0083785_18	eggNOG-mapper	1235788.C802_00102	NA	NA
UHGV-0083785_18	Structural annotation	PF05657	NA	NA
UHGV-0083785_19	PHROG	phrog_5377	NA	unknown function
UHGV-0083785_19	UniRef90	UniRef90_UPI0013CF742A	HK97 gp10 family phage protein	NA
UHGV-0083785_19	eggNOG-mapper	1235788.C802_00101	NA	NA
UHGV-0083785_20	PHROG	phrog_19449	NA	unknown function
UHGV-0083785_20	eggNOG-mapper	1235788.C802_00100	NA	NA
UHGV-0083785_20	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0083785_21	PHROG	phrog_16646	NA	unknown function
UHGV-0083785_21	eggNOG-mapper	1235788.C802_00099	NA	NA
UHGV-0083785_21	Pfam	PF20449	NA	DUF6706
UHGV-0083785_21	Structural annotation	PF20449	NA	NA
UHGV-0083785_22	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0083785_22	eggNOG-mapper	1347393.HG726021_gene479	NA	NA
UHGV-0083785_23	PHROG	phrog_29	major head protein	head and packaging
UHGV-0083785_23	UniRef90	UniRef90_UPI001D0917C0	major capsid protein	NA
UHGV-0083785_23	eggNOG-mapper	1235788.C802_00097	NA	NA
UHGV-0083785_23	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0083785_24	PHROG	phrog_9196	NA	unknown function
UHGV-0083785_24	eggNOG-mapper	1235788.C802_00096	NA	NA
UHGV-0083785_24	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0083785_25	PHROG	phrog_5824	NA	unknown function
UHGV-0083785_25	eggNOG-mapper	1235788.C802_00095	NA	NA
UHGV-0083785_26	PHROG	phrog_15742	NA	unknown function
UHGV-0083785_26	eggNOG-mapper	1236514.BAKL01000015_gene1658	NA	NA
UHGV-0083785_27	PHROG	phrog_35785	NA	unknown function
UHGV-0083785_28	PHROG	phrog_20236	NA	unknown function
UHGV-0083785_28	eggNOG-mapper	449673.BACSTE_02178	NA	NA
UHGV-0083785_29	PHROG	phrog_23198	NA	unknown function
UHGV-0083785_31	PHROG	phrog_22392	NA	unknown function
UHGV-0083785_31	UniRef90	UniRef90_A0A7J4XNG6	Demethylase	NA
UHGV-0083785_31	eggNOG-mapper	1121098.HMPREF1534_01085	NA	NA
UHGV-0083785_34	eggNOG-mapper	357276.EL88_12680	NA	NA
UHGV-0083785_38	eggNOG-mapper	742727.HMPREF9447_04886	NA	NA
UHGV-0083785_38	Structural annotation	PF18275	NA	NA
UHGV-0083785_41	UniRef90	UniRef90_A0A7J4XN74	Fructan hydrolase	NA
UHGV-0083785_41	eggNOG-mapper	470145.BACCOP_04168	NA	NA
UHGV-0083785_45	PHROG	phrog_13941	NA	unknown function
UHGV-0083785_45	eggNOG-mapper	1235788.C802_00082	NA	NA
UHGV-0083785_46	PHROG	phrog_24654	NA	unknown function
UHGV-0083785_48	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0083785_48	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0083785_48	UniRef90	UniRef90_A0A7J4XN61	RtcB family protein	NA
UHGV-0083785_48	eggNOG-mapper	398512.JQKC01000002_gene1705	NA	NA
UHGV-0083785_48	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0083785_48	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0083785_48	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0083785_51	PHROG	phrog_10608	NA	unknown function
UHGV-0083785_51	eggNOG-mapper	1235788.C802_00079	NA	NA
UHGV-0083785_52	Structural annotation	PF20155	NA	NA
UHGV-0083785_53	Structural annotation	PF11320	NA	NA
UHGV-0083785_54	PHROG	phrog_16625	NA	unknown function
UHGV-0083785_54	UniRef90	UniRef90_A0A4S2GD58	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0083785_54	eggNOG-mapper	1235788.C802_00074	NA	NA
UHGV-0083785_55	PHROG	phrog_34745	NA	unknown function
UHGV-0083785_55	eggNOG-mapper	1235788.C802_00073	NA	NA
UHGV-0083785_56	PHROG	phrog_64	portal protein	head and packaging
UHGV-0083785_56	UniRef90	UniRef90_A0A7J4XNI6	Phage portal protein	NA
UHGV-0083785_56	eggNOG-mapper	1235788.C802_00072	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0083785_56	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0083785_56	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0083785_57	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083785_57	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0083785_57	UniRef90	UniRef90_A0A7J4XN45	Phage portal protein	NA
UHGV-0083785_57	eggNOG-mapper	1235788.C802_00071	Phage terminase large subunit	NA
UHGV-0083785_57	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0083785_57	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0083785_58	PHROG	phrog_15125	NA	unknown function
UHGV-0083785_58	eggNOG-mapper	1235788.C802_00070	NA	NA
UHGV-0083785_59	PHROG	phrog_18290	NA	unknown function
UHGV-0083785_59	eggNOG-mapper	1235788.C802_00069	NA	NA
UHGV-0083785_60	PHROG	phrog_16681	NA	unknown function
UHGV-0083785_60	UniRef90	UniRef90_R5I2U0	FHA domain-containing protein	NA
UHGV-0083785_60	eggNOG-mapper	1235788.C802_00068	NA	NA
UHGV-0083785_61	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0083785_61	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0083785_61	UniRef90	UniRef90_A0A7J4XND3	NA	NA
UHGV-0083785_61	eggNOG-mapper	1235788.C802_00067	ParB-like nuclease domain	NA
UHGV-0083785_61	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0083785_61	Pfam	PF14386	NA	DUF4417
UHGV-0083785_61	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0083785_61	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0083785_62	PHROG	phrog_16697	NA	unknown function
UHGV-0083785_62	eggNOG-mapper	1235788.C802_00066	NA	NA
UHGV-0083785_63	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083785_63	eggNOG-mapper	449673.BACSTE_02198	NA	NA
UHGV-0083785_63	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0083785_65	PHROG	phrog_16718	NA	unknown function
UHGV-0083785_65	eggNOG-mapper	1235788.C802_00064	NA	NA
UHGV-0083785_65	Structural annotation	PF08860	NA	NA
UHGV-0083785_66	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0083785_66	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0083785_66	UniRef90	UniRef90_A0A7J4XN90	3'-5' exonuclease	NA
UHGV-0083785_66	eggNOG-mapper	1235788.C802_00063	Exonuclease	NA
UHGV-0083785_66	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0083785_66	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0083785_66	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0083785_66	Structural annotation	PF00929, MF_00157, TIGR01298, COG0847	NA	NA
UHGV-0083785_67	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0083785_67	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0083785_67	UniRef90	UniRef90_A0A7J4XNA1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0083785_67	eggNOG-mapper	1235788.C802_00062	KorB domain	NA
UHGV-0083785_67	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0083785_67	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0083785_67	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0083785_67	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0083785_70	PHROG	phrog_8581	NA	unknown function
UHGV-0083785_70	eggNOG-mapper	1235788.C802_00060	NA	NA
UHGV-0083785_71	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0083785_71	eggNOG-mapper	1235788.C802_00059	NA	NA
UHGV-0083785_71	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0083785_72	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0083785_72	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0083785_72	UniRef90	UniRef90_A0A7J4XNJ0	Replication protein	NA
UHGV-0083785_72	eggNOG-mapper	1235788.C802_00058	IstB-like ATP binding protein	NA
UHGV-0083785_72	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0083785_72	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0083785_73	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0083785_73	UniRef90	UniRef90_A0A4R2KBE2	Putative phage replisome organizer	NA
UHGV-0083785_73	eggNOG-mapper	1235788.C802_00057	NA	NA
UHGV-0083785_73	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0083785_74	PHROG	phrog_11501	NA	unknown function
UHGV-0083785_74	UniRef90	UniRef90_F3QQV3	Conserved domain protein	NA
UHGV-0083785_74	eggNOG-mapper	1235788.C802_00056	NA	NA
UHGV-0083785_74	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0083785_75	PHROG	phrog_12688	NA	unknown function
UHGV-0083785_75	eggNOG-mapper	1235788.C802_00055	NA	NA
UHGV-0083785_75	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-0083785_76	PHROG	phrog_11581	NA	unknown function
UHGV-0083785_76	eggNOG-mapper	1235788.C802_00053	NA	NA
UHGV-0083785_78	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0083785_78	eggNOG-mapper	1235788.C802_00052	NA	NA
UHGV-0083785_78	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0083785_79	PHROG	phrog_2113	NA	unknown function
UHGV-0083785_79	eggNOG-mapper	1235788.C802_00051	NA	NA
UHGV-0083785_80	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0083785_80	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0083785_80	UniRef90	UniRef90_A0A7J4XNJ3	MBL fold metallo-hydrolase	NA
UHGV-0083785_80	eggNOG-mapper	1235788.C802_00050	Metallo-beta-lactamase superfamily	NA
UHGV-0083785_80	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0083785_80	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0083785_80	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0083785_81	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0083785_81	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0083785_81	UniRef90	UniRef90_A0A7J4XNA4	Recombinase	NA
UHGV-0083785_81	eggNOG-mapper	1235788.C802_00049	RecT family	NA
UHGV-0083785_81	Pfam	PF03837	RecT family	RecT
UHGV-0083785_81	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0083785_81	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0083785_81	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0083785_82	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0083785_82	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083785_82	UniRef90	UniRef90_A0A7J4XNA6	AAA family ATPase	NA
UHGV-0083785_82	eggNOG-mapper	1235788.C802_00048	P-loop containing region of AAA domain	NA
UHGV-0083785_82	PADLOC	AAA_15	NA	NA
UHGV-0083785_82	Pfam	PF13476	AAA domain	AAA_23
UHGV-0083785_82	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083785_82	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0083785_83	PHROG	phrog_17289	NA	unknown function
UHGV-0083785_83	eggNOG-mapper	1235788.C802_00047	NA	NA
UHGV-0083785_83	Structural annotation	PF11112	NA	NA