UHGV-0083834

Genome information

Genome length 29,973 bps

CDS count 45

Completeness 74.59% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083834
vOTU ID	vOTU-034770
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_142053
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.74
Jumbo phage	No

Genome content
Genome length	29,973 bps
GC content	41.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.83%
Average CDS length	630.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083834_1	KOfam	K04485	radA, sms; DNA repair protein RadA/Sms	NA
UHGV-0083834_1	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0083834_1	UniRef90	UniRef90_A0A3R6W258	AAA domain-containing protein	NA
UHGV-0083834_1	eggNOG-mapper	585394.RHOM_02045	NA	NA
UHGV-0083834_1	Pfam	PF13481	AAA domain	AAA_25
UHGV-0083834_1	COG	COG3598	RecA-family ATPase	NA
UHGV-0083834_2	PHROG	phrog_6058	NA	unknown function
UHGV-0083834_2	eggNOG-mapper	585394.RHOM_02040	NA	NA
UHGV-0083834_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0083834_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083834_3	UniRef90	UniRef90_A0A0M6WTT4	HTH cro/C1-type domain-containing protein	NA
UHGV-0083834_3	eggNOG-mapper	585394.RHOM_02035	DNA-binding helix-turn-helix protein	NA
UHGV-0083834_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0083834_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083834_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083834_4	KOfam	K14059	int; integrase	NA
UHGV-0083834_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0083834_4	UniRef90	UniRef90_A0A0M6WRE3	Tyr recombinase domain-containing protein	NA
UHGV-0083834_4	eggNOG-mapper	585394.RHOM_02030	Belongs to the 'phage' integrase family	NA
UHGV-0083834_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0083834_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0083834_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0083834_7	PHROG	phrog_14030	NA	unknown function
UHGV-0083834_7	UniRef90	UniRef90_R5BP16	SH3b domain-containing protein	NA
UHGV-0083834_7	eggNOG-mapper	887325.HMPREF0381_0057	Putative cell wall binding repeat	NA
UHGV-0083834_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0083834_7	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0083834_7	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0083834_8	PHROG	phrog_199	holin	lysis
UHGV-0083834_8	UniRef90	UniRef90_A0A3A8WM59	Holin	NA
UHGV-0083834_8	eggNOG-mapper	1232449.BAHV02000008_gene653	Bacteriophage holin family	NA
UHGV-0083834_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0083834_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0083834_8	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0083834_9	PHROG	phrog_2889	NA	unknown function
UHGV-0083834_9	UniRef90	UniRef90_UPI0004820DED	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA
UHGV-0083834_9	eggNOG-mapper	1410653.JHVC01000013_gene3662	PFAM Formylglycine-generating sulfatase enzyme	NA
UHGV-0083834_9	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0083834_9	Structural annotation	PF03781, COG1262	NA	NA
UHGV-0083834_10	PHROG	phrog_8734	NA	unknown function
UHGV-0083834_10	eggNOG-mapper	97139.C824_00690	NA	NA
UHGV-0083834_11	PHROG	phrog_9010	NA	unknown function
UHGV-0083834_11	eggNOG-mapper	97139.C824_00692	NA	NA
UHGV-0083834_11	Structural annotation	NF012201	NA	NA
UHGV-0083834_13	PHROG	phrog_521	tail protein	tail
UHGV-0083834_13	UniRef90	UniRef90_A0A414A6C5	NA	NA
UHGV-0083834_13	eggNOG-mapper	445972.ANACOL_01771	NA	NA
UHGV-0083834_13	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0083834_13	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0083834_13	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0083834_14	PHROG	phrog_1608	tail protein	tail
UHGV-0083834_14	UniRef90	UniRef90_A0A3A8X7I1	Baseplate_J domain-containing protein	NA
UHGV-0083834_14	eggNOG-mapper	1195236.CTER_3989	Baseplate J-like protein	NA
UHGV-0083834_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0083834_14	COG	COG3299	NA	NA
UHGV-0083834_14	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0083834_15	PHROG	phrog_120	baseplate protein	tail
UHGV-0083834_15	UniRef90	UniRef90_A0A3A8WNF9	NA	NA
UHGV-0083834_15	eggNOG-mapper	1408324.JNJK01000006_gene1395	NA	NA
UHGV-0083834_15	Pfam	PF10934	NA	DUF2634
UHGV-0083834_15	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0083834_15	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0083834_16	PHROG	phrog_579	NA	unknown function
UHGV-0083834_16	UniRef90	UniRef90_UPI001A3A2AAC	NA	NA
UHGV-0083834_16	eggNOG-mapper	665950.HMPREF1025_01341	NA	NA
UHGV-0083834_16	Pfam	PF10844	NA	DUF2577
UHGV-0083834_16	Structural annotation	PF10844	NA	NA
UHGV-0083834_17	PHROG	phrog_400	tail protein	tail
UHGV-0083834_17	UniRef90	UniRef90_A0A6L5XWJ4	NlpC/P60 family protein	NA
UHGV-0083834_17	eggNOG-mapper	1408324.JNJK01000006_gene1393	NLP P60 protein	NA
UHGV-0083834_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0083834_17	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0083834_18	PHROG	phrog_380	endolysin	lysis
UHGV-0083834_18	UniRef90	UniRef90_A0A3A8X347	LysM domain-containing protein	NA
UHGV-0083834_18	eggNOG-mapper	665950.HMPREF1025_01343	LysM domain	NA
UHGV-0083834_18	Pfam	PF01476	LysM domain	LysM
UHGV-0083834_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0083834_18	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0083834_19	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0083834_19	UniRef90	UniRef90_A0A3A8WM39	Phage tail tape measure protein	NA
UHGV-0083834_19	eggNOG-mapper	1408324.JNJK01000006_gene1391	Phage-related minor tail protein	NA
UHGV-0083834_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0083834_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0083834_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0083834_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0083834_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0083834_20	UniRef90	UniRef90_A0A3A6KEU6	XkdN-like protein	NA
UHGV-0083834_20	eggNOG-mapper	1408324.JNJK01000006_gene1389	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0083834_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0083834_20	Structural annotation	PF08890	NA	NA
UHGV-0083834_21	PHROG	phrog_365	tail protein	tail
UHGV-0083834_21	UniRef90	UniRef90_A0A6L9HBP8	Phage portal protein	NA
UHGV-0083834_21	eggNOG-mapper	1095750.HMPREF9970_2275	Phage tail tube protein	NA
UHGV-0083834_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0083834_21	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0083834_22	PHROG	phrog_1480	tail sheath	tail
UHGV-0083834_22	UniRef90	UniRef90_A0A7X5L2L0	Phage tail sheath protein	NA
UHGV-0083834_22	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-0083834_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0083834_22	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0083834_23	PHROG	phrog_525	NA	unknown function
UHGV-0083834_23	Pfam	PF20765	NA	DUF6838
UHGV-0083834_23	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0083834_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0083834_24	UniRef90	UniRef90_A0A3A8X7H3	HK97 gp10 family phage protein	NA
UHGV-0083834_24	eggNOG-mapper	1078085.HMPREF1210_01140	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0083834_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0083834_24	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0083834_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0083834_25	UniRef90	UniRef90_A0A3A8X6B3	Head-tail adaptor protein	NA
UHGV-0083834_25	eggNOG-mapper	646529.Desaci_1304	TIGRFAM phage head-tail adaptor	NA
UHGV-0083834_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0083834_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0083834_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0083834_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0083834_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0083834_26	UniRef90	UniRef90_A0A3A8WM40	Phage gp6-like head-tail connector protein	NA
UHGV-0083834_26	eggNOG-mapper	1382315.JPOI01000001_gene279	Phage gp6-like head-tail connector protein	NA
UHGV-0083834_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0083834_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0083834_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0083834_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0083834_27	UniRef90	UniRef90_A0A3A8X339	Phage major capsid protein	NA
UHGV-0083834_27	eggNOG-mapper	1391647.AVSV01000039_gene1100	Phage major capsid protein, HK97 family	NA
UHGV-0083834_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0083834_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0083834_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0083834_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0083834_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0083834_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0083834_28	UniRef90	UniRef90_A0A414A6C4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0083834_28	eggNOG-mapper	1391647.AVSV01000039_gene1099	Belongs to the peptidase S14 family	NA
UHGV-0083834_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0083834_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0083834_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083834_29	UniRef90	UniRef90_A0A3A8WP54	Phage portal protein	NA
UHGV-0083834_29	eggNOG-mapper	1391647.AVSV01000039_gene1098	Phage portal protein, HK97 family	NA
UHGV-0083834_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083834_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083834_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083834_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083834_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083834_30	UniRef90	UniRef90_A0A3A8WNV7	Terminase large subunit	NA
UHGV-0083834_30	eggNOG-mapper	1396.DJ87_976	Terminase	NA
UHGV-0083834_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083834_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083834_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083834_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0083834_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0083834_31	UniRef90	UniRef90_A0A3A8WNB6	Phage terminase small subunit P27 family	NA
UHGV-0083834_31	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-0083834_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0083834_31	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0083834_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0083834_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0083834_32	UniRef90	UniRef90_A0A3A8WN02	HNH endonuclease	NA
UHGV-0083834_32	eggNOG-mapper	1508644.SFBmNL_00838	HNH endonuclease	NA
UHGV-0083834_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0083834_34	PHROG	phrog_10867	NA	unknown function
UHGV-0083834_34	eggNOG-mapper	411459.RUMOBE_01751	NA	NA
UHGV-0083834_35	UniRef90	UniRef90_A0A7C6U4I5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0083834_35	eggNOG-mapper	1297617.JPJD01000020_gene311	NA	NA
UHGV-0083834_35	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0083834_37	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0083834_37	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0083834_37	UniRef90	UniRef90_A0A3A8WNU4	3'-5' exonuclease	NA
UHGV-0083834_37	eggNOG-mapper	999413.HMPREF1094_04385	Exonuclease	NA
UHGV-0083834_37	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0083834_37	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0083834_37	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0083834_37	Structural annotation	PF00929, MF_00157, TIGR01298, COG0847	NA	NA
UHGV-0083834_38	PHROG	phrog_625	NA	unknown function
UHGV-0083834_38	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0083834_38	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0083834_38	Structural annotation	PF12961, NF003443, COG2947	NA	NA
UHGV-0083834_39	PHROG	phrog_19490	NA	unknown function
UHGV-0083834_39	eggNOG-mapper	411459.RUMOBE_01110	NA	NA
UHGV-0083834_40	eggNOG-mapper	887325.HMPREF0381_0090	NA	NA
UHGV-0083834_42	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0083834_42	UniRef90	UniRef90_A0A7V7B0A1	NA	NA
UHGV-0083834_42	eggNOG-mapper	1235792.C808_00627	NA	NA
UHGV-0083834_42	Pfam	PF14359	NA	DUF4406
UHGV-0083834_42	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0083834_43	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0083834_43	PHROG	phrog_15982	NA	unknown function
UHGV-0083834_43	UniRef90	UniRef90_A0A3A8X321	ParB domain-containing protein	NA
UHGV-0083834_43	eggNOG-mapper	1196322.A370_05736	Belongs to the ParB family	NA
UHGV-0083834_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0083834_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0083834_43	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0083834_44	PHROG	phrog_32950	NA	unknown function
UHGV-0083834_44	Structural annotation	PF18701, NF008636, COG4568	NA	NA
UHGV-0083834_45	eggNOG-mapper	1211817.CCAT010000008_gene924	Cellulose biosynthesis protein BcsQ	NA
UHGV-0083834_45	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA