UHGV-0083939

Genome information

Genome length 38,737 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0083939
vOTU ID	vOTU-014330
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152846
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.69
Jumbo phage	No

Genome content
Genome length	38,737 bps
GC content	47.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.48%
Average CDS length	654.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0083939_1	eggNOG-mapper	411473.RUMCAL_01614	NA	NA
UHGV-0083939_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0083939_2	UniRef90	UniRef90_A0A1K1YL55	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083939_2	eggNOG-mapper	1384066.JAGT01000001_gene941	large subunit	NA
UHGV-0083939_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0083939_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083939_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083939_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0083939_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0083939_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0083939_3	UniRef90	UniRef90_A0A3C0II41	Zn_ribbon_recom domain-containing protein	NA
UHGV-0083939_3	eggNOG-mapper	935948.KE386495_gene1360	Resolvase, N terminal domain	NA
UHGV-0083939_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0083939_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0083939_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0083939_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0083939_3	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0083939_4	UniRef90	UniRef90_A0A3C0II80	DZANK-type domain-containing protein	NA
UHGV-0083939_4	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0083939_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0083939_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0083939_5	UniRef90	UniRef90_A0A3C0IJA8	HTH cro/C1-type domain-containing protein	NA
UHGV-0083939_5	eggNOG-mapper	411473.RUMCAL_00406	Helix-turn-helix XRE-family like proteins	NA
UHGV-0083939_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083939_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0083939_15	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0083939_15	PHROG	phrog_1499	NA	unknown function
UHGV-0083939_15	UniRef90	UniRef90_A0A3C0II26	Chromosome segregation protein SMC	NA
UHGV-0083939_15	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-0083939_15	PADLOC	AAA_15	NA	NA
UHGV-0083939_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-0083939_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0083939_15	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0083939_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0083939_16	UniRef90	UniRef90_UPI0011620CA2	AAA family ATPase	NA
UHGV-0083939_16	eggNOG-mapper	641112.ACOK01000073_gene2874	AAA domain	NA
UHGV-0083939_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0083939_16	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0083939_17	PHROG	phrog_2698	NA	unknown function
UHGV-0083939_17	UniRef90	UniRef90_A0A3D1HDU6	NA	NA
UHGV-0083939_17	eggNOG-mapper	641112.ACOK01000073_gene2875	NA	NA
UHGV-0083939_17	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0083939_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0083939_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0083939_18	UniRef90	UniRef90_R7GUH4	Helicase C-terminal domain protein	NA
UHGV-0083939_18	eggNOG-mapper	641112.ACOK01000073_gene2876	helicase superfamily c-terminal domain	NA
UHGV-0083939_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0083939_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0083939_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0083939_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0083939_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0083939_19	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0083939_19	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0083939_19	UniRef90	UniRef90_A0A3C0II46	Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0083939_19	eggNOG-mapper	352165.HMPREF7215_0680	addiction module toxin, RelE StbE family	NA
UHGV-0083939_19	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0083939_19	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0083939_19	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0083939_19	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0083939_20	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0083939_21	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0083939_21	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0083939_21	UniRef90	UniRef90_A0A3C0IIQ3	DNA primase	NA
UHGV-0083939_21	eggNOG-mapper	641112.ACOK01000073_gene2877	Primase C terminal 2 (PriCT-2)	NA
UHGV-0083939_21	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0083939_21	Pfam	PF13481	AAA domain	AAA_25
UHGV-0083939_21	COG	COG3598	RecA-family ATPase	NA
UHGV-0083939_21	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0083939_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0083939_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0083939_22	UniRef90	UniRef90_A0A3D5KWI4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0083939_22	eggNOG-mapper	641112.ACOK01000073_gene2878	endodeoxyribonuclease RusA	NA
UHGV-0083939_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0083939_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0083939_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0083939_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0083939_25	UniRef90	UniRef90_R7GSL5	Putative RNA polymerase sigma 28 subunit FliA/WhiG subfamily	NA
UHGV-0083939_25	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0083939_26	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-0083939_26	UniRef90	UniRef90_A0A3C0II61	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0083939_26	eggNOG-mapper	1123288.SOV_2c10540	Helix-turn-helix of insertion element transposase	NA
UHGV-0083939_26	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0083939_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0083939_27	PHROG	phrog_10250	NA	unknown function
UHGV-0083939_27	UniRef90	UniRef90_A0A3D5KXX3	PBSX family phage terminase large subunit	NA
UHGV-0083939_27	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0083939_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0083939_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0083939_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0083939_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0083939_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0083939_28	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-0083939_28	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0083939_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0083939_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0083939_29	UniRef90	UniRef90_UPI001897D243	phage minor capsid protein	NA
UHGV-0083939_29	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0083939_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0083939_29	COG	COG2369	NA	NA
UHGV-0083939_29	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0083939_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0083939_30	UniRef90	UniRef90_W0U9J3	Phage minor capsid protein (Glycoside Hydrolase Family 25 protein )	NA
UHGV-0083939_30	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0083939_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0083939_30	COG	COG2369	NA	NA
UHGV-0083939_31	eggNOG-mapper	1280689.AUJC01000003_gene965	NA	NA
UHGV-0083939_32	PHROG	phrog_1048	NA	unknown function
UHGV-0083939_32	UniRef90	UniRef90_A0A3D5KWH4	NA	NA
UHGV-0083939_32	eggNOG-mapper	411473.RUMCAL_01927	NA	NA
UHGV-0083939_32	Pfam	PF11195	NA	DUF2829
UHGV-0083939_32	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0083939_32	Structural annotation	PF11195	NA	NA
UHGV-0083939_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0083939_33	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0083939_33	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0083939_33	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0083939_34	eggNOG-mapper	411473.RUMCAL_01930	NA	NA
UHGV-0083939_35	eggNOG-mapper	411473.RUMCAL_01930	NA	NA
UHGV-0083939_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0083939_36	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0083939_37	PHROG	phrog_3366	NA	unknown function
UHGV-0083939_37	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0083939_37	Pfam	PF20536	NA	DUF6751
UHGV-0083939_37	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0083939_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0083939_38	UniRef90	UniRef90_A0A3C0IHV2	Capsid protein	NA
UHGV-0083939_38	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0083939_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0083939_38	Structural annotation	PF11114	NA	NA
UHGV-0083939_39	PHROG	phrog_3266	tail completion	connector
UHGV-0083939_39	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0083939_39	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0083939_39	Structural annotation	PF12691	NA	NA
UHGV-0083939_40	PHROG	phrog_3099	NA	unknown function
UHGV-0083939_40	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0083939_41	PHROG	phrog_4450	NA	unknown function
UHGV-0083939_41	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0083939_41	Pfam	PF20378	NA	DUF6673
UHGV-0083939_41	Structural annotation	PF20378	NA	NA
UHGV-0083939_42	PHROG	phrog_706	NA	unknown function
UHGV-0083939_42	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0083939_42	eggNOG-mapper	641112.ACOK01000073_gene2903	Bacteriophage Gp15 protein	NA
UHGV-0083939_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0083939_42	Structural annotation	PF06854	NA	NA
UHGV-0083939_43	PHROG	phrog_5218	NA	unknown function
UHGV-0083939_43	UniRef90	UniRef90_A0A3D5KWG5	PhageMin_Tail domain-containing protein	NA
UHGV-0083939_43	eggNOG-mapper	565664.EFXG_01767	Phage-related minor tail protein	NA
UHGV-0083939_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0083939_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0083939_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0083939_44	Structural annotation	PF05939, TIGR01633, COG4718	NA	NA
UHGV-0083939_45	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0083939_46	KOfam	K24355	COL23A; collagen type XXIII alpha	NA
UHGV-0083939_46	PHROG	phrog_25888	NA	unknown function
UHGV-0083939_46	UniRef90	UniRef90_U2KR58	Collagen triple helix repeat protein	NA
UHGV-0083939_46	eggNOG-mapper	411473.RUMCAL_01941	cell adhesion	NA
UHGV-0083939_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0083939_46	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0083939_46	Structural annotation	PF10651, COG3470	NA	NA
UHGV-0083939_47	PHROG	phrog_35590	NA	unknown function
UHGV-0083939_47	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-0083939_47	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0083939_47	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0083939_48	Structural annotation	PF11195	NA	NA
UHGV-0083939_49	PHROG	phrog_4105	NA	unknown function
UHGV-0083939_49	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0083939_50	PHROG	phrog_443	holin	lysis
UHGV-0083939_50	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0083939_50	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0083939_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0083939_50	Structural annotation	PF16945	NA	NA
UHGV-0083939_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0083939_51	PHROG	phrog_291	endolysin	lysis
UHGV-0083939_51	UniRef90	UniRef90_A0A3D5KVU8	Peptidase_M15_3 domain-containing protein	NA
UHGV-0083939_51	eggNOG-mapper	1341157.RF007C_02545	hydrolase, family 25	NA
UHGV-0083939_51	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0083939_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0083939_51	COG	COG3108	NA	NA
UHGV-0083939_51	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-0083939_52	PHROG	phrog_7331	terminase large subunit	head and packaging
UHGV-0083939_52	UniRef90	UniRef90_R7H9J6	Putative phage terminase large subunit	NA
UHGV-0083939_52	eggNOG-mapper	411473.RUMCAL_01628	large subunit	NA
UHGV-0083939_52	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0083939_52	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0083939_53	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0083939_53	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0083939_53	UniRef90	UniRef90_A0A3D5KWZ7	Transcriptional regulator	NA
UHGV-0083939_53	eggNOG-mapper	658086.HMPREF0994_04676	Helix-turn-helix domain	NA
UHGV-0083939_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0083939_53	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0083939_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0083939_54	PHROG	phrog_2523	NA	unknown function
UHGV-0083939_54	UniRef90	UniRef90_UPI001C0F33AD	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0083939_54	eggNOG-mapper	658086.HMPREF0994_04675	NA	NA
UHGV-0083939_54	Pfam	PF05973	NA	Gp49
UHGV-0083939_54	COG	COG4679	Phage-related protein	NA
UHGV-0083939_54	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0083939_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0083939_55	UniRef90	UniRef90_U2M1G3	Phage portal protein, HK97 family	NA
UHGV-0083939_55	eggNOG-mapper	411473.RUMCAL_01625	Phage portal protein, HK97 family	NA
UHGV-0083939_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0083939_55	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0083939_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0083939_55	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0083939_56	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0083939_56	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0083939_56	UniRef90	UniRef90_A0A1C6CKN2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0083939_56	eggNOG-mapper	411473.RUMCAL_01624	Belongs to the peptidase S14 family	NA
UHGV-0083939_56	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0083939_56	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0083939_56	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA