UHGV-0084017

Genome information

Genome length 38,888 bps

CDS count 58

Completeness 93.61% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084017
vOTU ID	vOTU-067118
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_162458
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.18
Jumbo phage	No

Genome content
Genome length	38,888 bps
GC content	40.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.07%
Average CDS length	616.24 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084017_1	PHROG	phrog_199	holin	lysis
UHGV-0084017_1	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0084017_1	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0084017_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0084017_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0084017_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0084017_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0084017_2	Structural annotation	PF08931	NA	NA
UHGV-0084017_3	PHROG	phrog_24103	NA	unknown function
UHGV-0084017_3	eggNOG-mapper	420247.Msm_1688	NA	NA
UHGV-0084017_4	PHROG	phrog_16164	NA	unknown function
UHGV-0084017_4	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0084017_4	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0084017_5	PHROG	phrog_21765	NA	unknown function
UHGV-0084017_5	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0084017_5	eggNOG-mapper	97139.C824_05954	NA	NA
UHGV-0084017_6	PHROG	phrog_14030	NA	unknown function
UHGV-0084017_6	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0084017_6	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0084017_6	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0084017_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0084017_6	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0084017_7	PHROG	phrog_13289	tail protein	tail
UHGV-0084017_7	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-0084017_7	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0084017_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0084017_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0084017_7	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0084017_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0084017_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0084017_8	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0084017_8	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0084017_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0084017_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0084017_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0084017_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0084017_9	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0084017_9	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-0084017_9	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0084017_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0084017_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0084017_9	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0084017_9	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0084017_10	PHROG	phrog_3033	NA	unknown function
UHGV-0084017_10	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0084017_10	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0084017_11	PHROG	phrog_709	NA	unknown function
UHGV-0084017_11	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0084017_11	Structural annotation	PF11836	NA	NA
UHGV-0084017_12	PHROG	phrog_88	major tail protein	tail
UHGV-0084017_12	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0084017_12	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0084017_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0084017_13	PHROG	phrog_78	tail terminator	connector
UHGV-0084017_13	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0084017_13	Structural annotation	PF20765	NA	NA
UHGV-0084017_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0084017_14	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0084017_14	eggNOG-mapper	1123298.KB904077_gene463	NA	NA
UHGV-0084017_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0084017_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0084017_15	PHROG	phrog_19734	NA	unknown function
UHGV-0084017_15	eggNOG-mapper	610130.Closa_0746	NA	NA
UHGV-0084017_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0084017_16	PHROG	phrog_749	NA	unknown function
UHGV-0084017_16	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0084017_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084017_17	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0084017_17	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0084017_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084017_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084017_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084017_17	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0084017_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0084017_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0084017_18	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0084017_18	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0084017_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0084017_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0084017_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0084017_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084017_19	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0084017_19	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0084017_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084017_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0084017_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0084017_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0084017_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0084017_20	UniRef90	UniRef90_A0A2N5NUK9	Terminase	NA
UHGV-0084017_20	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0084017_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0084017_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0084017_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0084017_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0084017_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0084017_21	UniRef90	UniRef90_UPI001A9A3020	P27 family phage terminase small subunit	NA
UHGV-0084017_21	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0084017_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0084017_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0084017_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0084017_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084017_22	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0084017_22	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0084017_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0084017_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0084017_23	UniRef90	UniRef90_A0A2N5Q1T5	Chemotaxis protein	NA
UHGV-0084017_23	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0084017_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0084017_25	UniRef90	UniRef90_UPI001C8D2455	RNA polymerase subunit sigma-70	NA
UHGV-0084017_25	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-0084017_25	Structural annotation	PF02996	NA	NA
UHGV-0084017_27	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0084017_30	PHROG	phrog_26861	NA	unknown function
UHGV-0084017_30	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-0084017_30	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0084017_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084017_30	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0084017_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084017_30	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0084017_31	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0084017_32	PHROG	phrog_7566	NA	unknown function
UHGV-0084017_32	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0084017_33	PHROG	phrog_15077	NA	unknown function
UHGV-0084017_33	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-0084017_33	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0084017_33	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0084017_34	PHROG	phrog_8470	NA	unknown function
UHGV-0084017_34	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0084017_34	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0084017_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0084017_34	Structural annotation	PF14284	NA	NA
UHGV-0084017_35	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0084017_35	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0084017_35	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0084017_36	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0084017_36	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0084017_36	UniRef90	UniRef90_R5TR44	RNase H type-1 domain-containing protein	NA
UHGV-0084017_36	eggNOG-mapper	1232453.BAIF02000027_gene4200	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0084017_36	Pfam	PF00075	RNase H	RNase_H
UHGV-0084017_36	COG	COG0328	Ribonuclease HI	NA
UHGV-0084017_36	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0084017_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084017_37	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0084017_37	Structural annotation	PF01446	NA	NA
UHGV-0084017_41	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-0084017_42	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0084017_42	UniRef90	UniRef90_A0A2N5PKF2	Bro-N domain-containing protein	NA
UHGV-0084017_42	eggNOG-mapper	864563.HMPREF9166_0590	Phage regulatory protein	NA
UHGV-0084017_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0084017_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0084017_42	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0084017_46	Structural annotation	PF04314, NF041740, COG2847	NA	NA
UHGV-0084017_48	UniRef90	UniRef90_A0A414UVS4	HTH cro/C1-type domain-containing protein	NA
UHGV-0084017_48	eggNOG-mapper	1235798.C817_04758	NA	NA
UHGV-0084017_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084017_48	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0084017_49	UniRef90	UniRef90_A0A2N5NUM8	DNA-binding protein	NA
UHGV-0084017_49	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084017_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084017_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084017_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0084017_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0084017_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0084017_50	UniRef90	UniRef90_A0A1C5X479	LexA repressor	NA
UHGV-0084017_50	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0084017_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084017_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0084017_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0084017_50	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0084017_51	PHROG	phrog_2700	NA	unknown function
UHGV-0084017_51	UniRef90	UniRef90_UPI00051C0377	PH domain-containing protein	NA
UHGV-0084017_51	eggNOG-mapper	445335.CBN_1925	Short C-terminal domain	NA
UHGV-0084017_51	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0084017_51	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0084017_51	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0084017_52	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0084017_52	UniRef90	UniRef90_UPI001C03809A	Abi family protein	NA
UHGV-0084017_52	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-0084017_52	PADLOC	AbiD	AbiD	Abi
UHGV-0084017_52	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0084017_52	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0084017_52	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0084017_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0084017_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0084017_53	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-0084017_53	eggNOG-mapper	1235792.C808_03104	NA	NA
UHGV-0084017_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0084017_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0084017_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0084017_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0084017_53	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0084017_55	PHROG	phrog_18666	NA	unknown function
UHGV-0084017_56	UniRef90	UniRef90_A0A2N5Q1U3	Transcriptional regulator	NA
UHGV-0084017_56	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084017_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084017_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084017_56	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0084017_57	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084017_57	UniRef90	UniRef90_UPI0013DDD289	transcriptional regulator	NA
UHGV-0084017_57	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0084017_57	AcrCatalog	cluster_5564	NA	NA
UHGV-0084017_57	Structural annotation	PF18337, PF00847	NA	NA