UHGV-0084090

Genome information

Genome length 39,873 bps

CDS count 56

Completeness 80.86% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084090
vOTU ID	vOTU-017044
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167729
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.11
Jumbo phage	No

Genome content
Genome length	39,873 bps
GC content	41.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.19%
Average CDS length	660.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084090_1	PHROG	phrog_1847	NA	unknown function
UHGV-0084090_1	UniRef90	UniRef90_UPI001D07EED3	NA	NA
UHGV-0084090_1	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0084090_1	Pfam	PF13250	NA	DUF4041
UHGV-0084090_1	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0084090_1	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0084090_1	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0084090_2	PHROG	phrog_87	metallo-protease	other
UHGV-0084090_2	UniRef90	UniRef90_A0A564SD80	Peptidase_M78 domain-containing protein	NA
UHGV-0084090_2	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0084090_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0084090_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0084090_2	Structural annotation	PF06114, COG3800	NA	NA
UHGV-0084090_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084090_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084090_3	UniRef90	UniRef90_UPI001D0E75FB	helix-turn-helix domain-containing protein	NA
UHGV-0084090_3	eggNOG-mapper	1111454.HMPREF1250_1030	Helix-turn-helix domain protein	NA
UHGV-0084090_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084090_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084090_3	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0084090_4	UniRef90	UniRef90_UPI001D0EC159	helix-turn-helix domain-containing protein	NA
UHGV-0084090_4	eggNOG-mapper	1111454.HMPREF1250_1031	NA	NA
UHGV-0084090_4	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0084090_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0084090_5	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0084090_5	UniRef90	UniRef90_A0A7U9JWI4	ORF6N domain-containing protein,ORF6C domain-containing protein	NA
UHGV-0084090_5	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0084090_5	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0084090_5	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0084090_5	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0084090_5	Structural annotation	PF10552, PF10543, TIGR02681, COG3943	NA	NA
UHGV-0084090_7	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0084090_8	UniRef90	UniRef90_A0A1Q6J9H1	HTH cro/C1-type domain-containing protein	NA
UHGV-0084090_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084090_8	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-0084090_11	PHROG	phrog_674	NA	unknown function
UHGV-0084090_11	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0084090_11	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0084090_11	Pfam	PF07083	NA	DUF1351
UHGV-0084090_11	Structural annotation	PF07083	NA	NA
UHGV-0084090_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0084090_12	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0084090_12	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0084090_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0084090_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084090_12	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0084090_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0084090_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084090_13	UniRef90	UniRef90_A0A1Q6J9G6	Single-stranded DNA-binding protein	NA
UHGV-0084090_13	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0084090_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084090_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0084090_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084090_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0084090_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0084090_14	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0084090_14	UniRef90	UniRef90_A0A1Q6J935	ERCC4 domain-containing protein	NA
UHGV-0084090_14	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0084090_14	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0084090_14	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0084090_15	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0084090_15	PHROG	phrog_11992	NA	unknown function
UHGV-0084090_15	UniRef90	UniRef90_A0A373STX8	DNA primase	NA
UHGV-0084090_15	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0084090_15	PADLOC	drt-UG29	DRT	DRT
UHGV-0084090_15	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0084090_15	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0084090_15	Structural annotation	PF01807	NA	NA
UHGV-0084090_16	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0084090_16	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0084090_16	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0084090_16	Pfam	PF06048	NA	DUF927
UHGV-0084090_16	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0084090_16	COG	COG5519	NA	NA
UHGV-0084090_16	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0084090_17	PHROG	phrog_23374	NA	unknown function
UHGV-0084090_18	eggNOG-mapper	658655.HMPREF0988_02579	NA	NA
UHGV-0084090_18	Structural annotation	MF_00773, NF041909, COG2888	NA	NA
UHGV-0084090_20	UniRef90	UniRef90_A0A1Q6J917	NA	NA
UHGV-0084090_20	Pfam	PF04448	NA	DUF551
UHGV-0084090_21	PHROG	phrog_20593	NA	unknown function
UHGV-0084090_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0084090_24	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0084090_24	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0084090_24	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0084090_26	PHROG	phrog_2412	NA	unknown function
UHGV-0084090_26	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0084090_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0084090_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0084090_27	UniRef90	UniRef90_A0A373SU52	PBSX family phage terminase large subunit	NA
UHGV-0084090_27	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0084090_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0084090_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0084090_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0084090_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0084090_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0084090_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0084090_28	UniRef90	UniRef90_A0A373SVA4	Phage portal protein	NA
UHGV-0084090_28	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0084090_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0084090_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0084090_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0084090_29	UniRef90	UniRef90_UPI0018AA9658	phage minor capsid protein	NA
UHGV-0084090_29	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-0084090_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0084090_29	COG	COG2369	NA	NA
UHGV-0084090_29	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0084090_30	eggNOG-mapper	742765.HMPREF9457_02124	NA	NA
UHGV-0084090_31	KOfam	K07584	NA	NA
UHGV-0084090_31	PHROG	phrog_4478	peptidase	other
UHGV-0084090_31	UniRef90	UniRef90_A0A373SW52	Ribosomal-processing cysteine protease Prp	NA
UHGV-0084090_31	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0084090_31	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0084090_31	COG	COG2868	NA	NA
UHGV-0084090_31	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0084090_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0084090_32	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0084090_32	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0084090_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084090_33	UniRef90	UniRef90_A0A1Q6J9M7	Phage capsid protein	NA
UHGV-0084090_33	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0084090_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084090_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084090_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084090_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0084090_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0084090_35	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0084090_36	PHROG	phrog_3366	NA	unknown function
UHGV-0084090_36	Structural annotation	PF20536	NA	NA
UHGV-0084090_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0084090_37	UniRef90	UniRef90_UPI001D074B8B	minor capsid protein	NA
UHGV-0084090_37	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0084090_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0084090_37	Structural annotation	PF11114	NA	NA
UHGV-0084090_38	PHROG	phrog_3266	tail completion	connector
UHGV-0084090_38	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0084090_38	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0084090_38	Structural annotation	PF12691	NA	NA
UHGV-0084090_39	PHROG	phrog_3099	NA	unknown function
UHGV-0084090_39	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0084090_39	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0084090_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0084090_40	PHROG	phrog_4450	NA	unknown function
UHGV-0084090_40	UniRef90	UniRef90_A0A7M2RHR3	AP endonuclease	NA
UHGV-0084090_40	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0084090_40	Pfam	PF20378	NA	DUF6673
UHGV-0084090_40	Structural annotation	PF20378	NA	NA
UHGV-0084090_41	PHROG	phrog_706	NA	unknown function
UHGV-0084090_41	UniRef90	UniRef90_A0A174K3F3	Bacteriophage Gp15 protein	NA
UHGV-0084090_41	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0084090_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0084090_41	Structural annotation	PF06854	NA	NA
UHGV-0084090_42	PHROG	phrog_19074	NA	unknown function
UHGV-0084090_42	UniRef90	UniRef90_A0A391P3M6	PhageMin_Tail domain-containing protein	NA
UHGV-0084090_42	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0084090_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0084090_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0084090_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0084090_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0084090_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0084090_43	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0084090_43	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0084090_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0084090_43	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0084090_44	PHROG	phrog_3558	tail protein	tail
UHGV-0084090_44	UniRef90	UniRef90_UPI00189E3615	phage tail protein	NA
UHGV-0084090_44	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0084090_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0084090_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0084090_44	COG	COG4926	Phage-related protein	NA
UHGV-0084090_44	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0084090_46	Structural annotation	PF16323	NA	NA
UHGV-0084090_47	PHROG	phrog_16164	NA	unknown function
UHGV-0084090_47	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0084090_47	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0084090_48	PHROG	phrog_17147	NA	unknown function
UHGV-0084090_48	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0084090_49	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0084090_49	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0084090_49	UniRef90	UniRef90_D4J8M1	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0084090_49	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0084090_49	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0084090_49	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0084090_50	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0084090_50	UniRef90	UniRef90_UPI001C0F60E0	acyl carrier protein	NA
UHGV-0084090_50	eggNOG-mapper	608534.GCWU000341_02274	NA	NA
UHGV-0084090_50	Structural annotation	PF14301	NA	NA
UHGV-0084090_51	PHROG	phrog_20274	NA	unknown function
UHGV-0084090_51	UniRef90	UniRef90_UPI001C02045F	putative ABC transporter permease	NA
UHGV-0084090_51	eggNOG-mapper	1298920.KI911353_gene4880	NA	NA
UHGV-0084090_51	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0084090_51	COG	COG4905	NA	NA
UHGV-0084090_51	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0084090_52	eggNOG-mapper	33035.JPJF01000043_gene997	NA	NA
UHGV-0084090_53	PHROG	phrog_4105	NA	unknown function
UHGV-0084090_53	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0084090_54	PHROG	phrog_15303	NA	unknown function
UHGV-0084090_54	eggNOG-mapper	394503.Ccel_3271	NA	NA
UHGV-0084090_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084090_55	PHROG	phrog_1794	amidase	lysis
UHGV-0084090_55	UniRef90	UniRef90_A0A1Q6J944	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0084090_55	eggNOG-mapper	1232453.BAIF02000013_gene3229	Ami_2	NA
UHGV-0084090_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0084090_55	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0084090_55	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0084090_56	KOfam	K07450	K07450; putative resolvase	NA
UHGV-0084090_56	UniRef90	UniRef90_A0A1C5KML5	MerR family regulatory protein	NA
UHGV-0084090_56	eggNOG-mapper	1280696.ATVY01000073_gene1221	Resolvase, N terminal domain	NA
UHGV-0084090_56	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0084090_56	COG	COG2452	Predicted site-specific integrase-resolvase	NA