UHGV-0084185

Genome information

Genome length 31,698 bps

CDS count 45

Completeness 100.00% (complete)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084185
vOTU ID	vOTU-045206
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157840
BioSample	SAMEA2784471
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.88
Jumbo phage	No

Genome content
Genome length	31,698 bps
GC content	57.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.79%
Average CDS length	650.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084185_1	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0084185_1	UniRef90	UniRef90_A0A4S2F0B7	Prophage_tail domain-containing protein	NA
UHGV-0084185_1	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0084185_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0084185_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0084185_1	COG	COG4926	Phage-related protein	NA
UHGV-0084185_2	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0084185_3	PHROG	phrog_19280	NA	unknown function
UHGV-0084185_3	UniRef90	UniRef90_A0A7C8FXT8	NA	NA
UHGV-0084185_3	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0084185_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0084185_3	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0084185_4	UniRef90	UniRef90_A0A4S2EZW7	NA	NA
UHGV-0084185_4	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-0084185_4	Pfam	PF19789	NA	DUF6273
UHGV-0084185_4	Structural annotation	PF19789	NA	NA
UHGV-0084185_5	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0084185_5	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-0084185_5	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0084185_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0084185_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0084185_6	UniRef90	UniRef90_A0A4V3RRI7	RNA-directed DNA polymerase	NA
UHGV-0084185_6	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0084185_6	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0084185_6	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0084185_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0084185_6	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0084185_7	PHROG	phrog_18593	NA	unknown function
UHGV-0084185_7	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-0084185_7	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0084185_7	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0084185_7	Structural annotation	PF14600	NA	NA
UHGV-0084185_8	PHROG	phrog_4105	NA	unknown function
UHGV-0084185_9	PHROG	phrog_10091	holin	lysis
UHGV-0084185_9	UniRef90	UniRef90_A0A4S2F3K8	Phage holin	NA
UHGV-0084185_9	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0084185_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0084185_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0084185_9	COG	COG5546	NA	NA
UHGV-0084185_9	Structural annotation	COG5546	NA	NA
UHGV-0084185_10	UniRef90	UniRef90_UPI0013EF0CCF	C39 family peptidase	NA
UHGV-0084185_10	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-0084185_10	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0084185_10	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0084185_10	Structural annotation	PF03412, NF033920, COG4990	NA	NA
UHGV-0084185_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0084185_11	PHROG	phrog_291	endolysin	lysis
UHGV-0084185_11	UniRef90	UniRef90_A0A369PBE1	LysM domain-containing protein	NA
UHGV-0084185_11	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0084185_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0084185_11	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0084185_11	Pfam	PF01476	LysM domain	LysM
UHGV-0084185_11	COG	COG1388	LysM repeat	NA
UHGV-0084185_11	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0084185_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0084185_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0084185_12	UniRef90	UniRef90_A0A4S2F3Y2	Resolvase	NA
UHGV-0084185_12	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0084185_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0084185_12	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0084185_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0084185_12	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0084185_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084185_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084185_13	UniRef90	UniRef90_A0A4S2F4D8	XRE family transcriptional regulator	NA
UHGV-0084185_13	eggNOG-mapper	411467.BACCAP_02432	sequence-specific DNA binding	NA
UHGV-0084185_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084185_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084185_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084185_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084185_14	UniRef90	UniRef90_A0A7K3KM52	Helix-turn-helix domain-containing protein	NA
UHGV-0084185_14	eggNOG-mapper	411467.BACCAP_00587	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084185_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084185_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0084185_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0084185_15	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0084185_17	PHROG	phrog_24189	NA	unknown function
UHGV-0084185_17	UniRef90	UniRef90_A0A4S2EZW4	NA	NA
UHGV-0084185_17	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0084185_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0084185_17	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0084185_19	PHROG	phrog_24658	NA	unknown function
UHGV-0084185_19	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0084185_22	PHROG	phrog_236	nucleotide kinase	other
UHGV-0084185_22	UniRef90	UniRef90_A0A4S2F3I0	NA	NA
UHGV-0084185_22	eggNOG-mapper	1121866.AUGK01000003_gene1417	NA	NA
UHGV-0084185_22	Pfam	PF11753	NA	DUF3310
UHGV-0084185_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0084185_23	UniRef90	UniRef90_A0A7C8BT61	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0084185_23	eggNOG-mapper	411476.BACOVA_03904	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0084185_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0084185_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0084185_23	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-0084185_24	KOfam	K14059	int; integrase	NA
UHGV-0084185_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0084185_24	UniRef90	UniRef90_A0A4S2F0A5	Site-specific integrase	NA
UHGV-0084185_24	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0084185_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0084185_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0084185_24	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0084185_25	UniRef90	UniRef90_UPI001C3D3A75	integration host factor	NA
UHGV-0084185_25	eggNOG-mapper	445975.COLSTE_02174	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	NA
UHGV-0084185_25	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0084185_25	COG	COG0099	Ribosomal protein S13	NA
UHGV-0084185_25	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0084185_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0084185_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084185_26	UniRef90	UniRef90_UPI001C3DD918	single-stranded DNA-binding protein	NA
UHGV-0084185_26	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0084185_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084185_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0084185_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084185_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0084185_26	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0084185_27	eggNOG-mapper	1304866.K413DRAFT_4633	NA	NA
UHGV-0084185_29	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0084185_29	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0084185_29	UniRef90	UniRef90_A0A4S2EZX6	dUTP diphosphatase	NA
UHGV-0084185_29	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0084185_29	Pfam	PF00692	dUTPase	dUTPase
UHGV-0084185_29	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0084185_29	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0084185_29	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0084185_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0084185_30	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0084185_30	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0084185_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0084185_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084185_31	UniRef90	UniRef90_A0A4S2F4H0	HNH endonuclease	NA
UHGV-0084185_31	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0084185_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0084185_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0084185_32	PHROG	phrog_1066	NA	unknown function
UHGV-0084185_32	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0084185_32	Structural annotation	TIGR01558	NA	NA
UHGV-0084185_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0084185_33	UniRef90	UniRef90_A0A4S2F3I9	Terminase large subunit	NA
UHGV-0084185_33	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0084185_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0084185_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0084185_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0084185_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0084185_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084185_34	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0084185_34	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0084185_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084185_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0084185_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0084185_35	KOfam	K06904	NA	NA
UHGV-0084185_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0084185_35	UniRef90	UniRef90_A0A7C8FV10	HK97 family phage prohead protease	NA
UHGV-0084185_35	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0084185_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0084185_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0084185_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0084185_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084185_36	UniRef90	UniRef90_A0A7C8FMW6	Phage major capsid protein	NA
UHGV-0084185_36	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0084185_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084185_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084185_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084185_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0084185_37	PHROG	phrog_5223	neck protein	connector
UHGV-0084185_37	UniRef90	UniRef90_A0A4S2F1B5	DNA-packaging protein	NA
UHGV-0084185_37	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0084185_38	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0084185_38	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-0084185_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0084185_39	UniRef90	UniRef90_A0A7T9WC06	HK97 gp10 family phage protein	NA
UHGV-0084185_39	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0084185_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0084185_40	eggNOG-mapper	471875.RUMLAC_02244	NA	NA
UHGV-0084185_40	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0084185_41	PHROG	phrog_88	major tail protein	tail
UHGV-0084185_41	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0084185_41	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0084185_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0084185_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0084185_42	Structural annotation	PF12363	NA	NA
UHGV-0084185_43	PHROG	phrog_23464	NA	unknown function
UHGV-0084185_43	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0084185_43	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0084185_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0084185_43	Structural annotation	COG5280	NA	NA
UHGV-0084185_44	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0084185_44	UniRef90	UniRef90_A0A4S2F4G3	Phage tail family protein	NA
UHGV-0084185_44	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0084185_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0084185_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0084185_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0084185_44	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0084185_45	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0084185_45	COG	COG4926	Phage-related protein	NA