UHGV-0084207

Genome information

Genome length 36,100 bps

CDS count 49

Completeness 80.58% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084207
vOTU ID	vOTU-025228
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_164505
BioSample	SAMEA3136648
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.59
Jumbo phage	No

Genome content
Genome length	36,100 bps
GC content	38.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.65%
Average CDS length	693.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084207_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0084207_2	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0084207_2	UniRef90	UniRef90_A0A373MWF0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0084207_2	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0084207_2	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0084207_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0084207_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0084207_2	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0084207_5	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0084207_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0084207_6	UniRef90	UniRef90_UPI001571211B	NA	NA
UHGV-0084207_6	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-0084207_6	Pfam	PF07374	NA	DUF1492
UHGV-0084207_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0084207_6	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0084207_7	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0084207_7	UniRef90	UniRef90_UPI001D07E0EA	phage terminase small subunit	NA
UHGV-0084207_7	eggNOG-mapper	1235792.C808_05361	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0084207_7	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0084207_7	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0084207_7	COG	COG5484	NA	NA
UHGV-0084207_7	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0084207_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0084207_8	PHROG	phrog_10250	NA	unknown function
UHGV-0084207_8	UniRef90	UniRef90_A0A373SU52	PBSX family phage terminase large subunit	NA
UHGV-0084207_8	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0084207_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0084207_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0084207_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0084207_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0084207_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0084207_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0084207_9	UniRef90	UniRef90_A0A173TXV5	Phage portal protein, putative, A118 family	NA
UHGV-0084207_9	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0084207_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0084207_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0084207_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0084207_10	UniRef90	UniRef90_UPI0018AA9658	phage minor capsid protein	NA
UHGV-0084207_10	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0084207_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0084207_10	COG	COG2369	NA	NA
UHGV-0084207_10	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0084207_11	eggNOG-mapper	742765.HMPREF9457_02124	NA	NA
UHGV-0084207_12	KOfam	K07584	NA	NA
UHGV-0084207_12	PHROG	phrog_4478	peptidase	other
UHGV-0084207_12	UniRef90	UniRef90_UPI001D015AF1	ribosomal-processing cysteine protease Prp	NA
UHGV-0084207_12	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0084207_12	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0084207_12	COG	COG2868	NA	NA
UHGV-0084207_12	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0084207_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0084207_13	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0084207_13	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0084207_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084207_14	UniRef90	UniRef90_A0A391PHY8	Phage capsid protein	NA
UHGV-0084207_14	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0084207_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084207_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084207_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084207_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0084207_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0084207_16	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0084207_17	PHROG	phrog_3366	NA	unknown function
UHGV-0084207_17	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-0084207_17	Pfam	PF20536	NA	DUF6751
UHGV-0084207_17	Structural annotation	PF20536	NA	NA
UHGV-0084207_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0084207_18	UniRef90	UniRef90_UPI001D074B8B	minor capsid protein	NA
UHGV-0084207_18	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0084207_18	Structural annotation	PF11114	NA	NA
UHGV-0084207_19	PHROG	phrog_3266	tail completion	connector
UHGV-0084207_19	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0084207_19	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0084207_19	Structural annotation	PF12691	NA	NA
UHGV-0084207_20	PHROG	phrog_3099	NA	unknown function
UHGV-0084207_20	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0084207_20	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0084207_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0084207_21	PHROG	phrog_4450	NA	unknown function
UHGV-0084207_21	UniRef90	UniRef90_A0A416RQL6	AP endonuclease	NA
UHGV-0084207_21	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0084207_21	Pfam	PF20378	NA	DUF6673
UHGV-0084207_21	Structural annotation	PF20378	NA	NA
UHGV-0084207_22	PHROG	phrog_706	NA	unknown function
UHGV-0084207_22	UniRef90	UniRef90_D4J8M9	Bacteriophage Gp15 protein	NA
UHGV-0084207_22	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0084207_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0084207_22	Structural annotation	PF06854	NA	NA
UHGV-0084207_23	Structural annotation	PF14205	NA	NA
UHGV-0084207_24	PHROG	phrog_19074	NA	unknown function
UHGV-0084207_24	UniRef90	UniRef90_A0A391P3M6	PhageMin_Tail domain-containing protein	NA
UHGV-0084207_24	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0084207_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0084207_24	Pfam	PF04691	Apolipoprotein C-I (ApoC-1)	ApoC-I
UHGV-0084207_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0084207_24	COG	COG5283	Phage-related tail protein	NA
UHGV-0084207_24	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0084207_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0084207_25	UniRef90	UniRef90_D4J8M6	Phage tail protein	NA
UHGV-0084207_25	eggNOG-mapper	1235792.C808_05349	NA	NA
UHGV-0084207_25	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0084207_26	PHROG	phrog_9886	NA	unknown function
UHGV-0084207_26	UniRef90	UniRef90_UPI0002D787EE	phage tail protein	NA
UHGV-0084207_26	eggNOG-mapper	1235792.C808_03048	Prophage endopeptidase tail	NA
UHGV-0084207_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0084207_26	COG	COG4926	Phage-related protein	NA
UHGV-0084207_26	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-0084207_28	PHROG	phrog_11105	NA	unknown function
UHGV-0084207_29	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0084207_30	PHROG	phrog_2310	NA	unknown function
UHGV-0084207_31	PHROG	phrog_4105	NA	unknown function
UHGV-0084207_31	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0084207_32	PHROG	phrog_1129	holin	lysis
UHGV-0084207_32	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0084207_32	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0084207_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0084207_32	Structural annotation	PF16079	NA	NA
UHGV-0084207_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084207_33	PHROG	phrog_35436	amidase	lysis
UHGV-0084207_33	UniRef90	UniRef90_UPI001D016E56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0084207_33	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0084207_33	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0084207_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0084207_33	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0084207_33	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0084207_34	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0084207_35	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-0084207_35	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084207_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084207_35	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0084207_37	UniRef90	UniRef90_R6RYB6	Thermophilus bacteriophage protein	NA
UHGV-0084207_37	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0084207_39	UniRef90	UniRef90_UPI000E4AC373	NA	NA
UHGV-0084207_39	eggNOG-mapper	1121115.AXVN01000132_gene727	NA	NA
UHGV-0084207_39	Pfam	PF19552	NA	DUF6075
UHGV-0084207_40	eggNOG-mapper	585394.RHOM_15655	NA	NA
UHGV-0084207_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0084207_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0084207_41	UniRef90	UniRef90_A0A2X2WR71	Chromosome partitioning ATPase	NA
UHGV-0084207_41	eggNOG-mapper	585394.RHOM_15650	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0084207_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-0084207_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0084207_41	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0084207_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0084207_42	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0084207_42	UniRef90	UniRef90_A0A2X2UIC4	ParB-like partition protein	NA
UHGV-0084207_42	eggNOG-mapper	585394.RHOM_15645	Belongs to the ParB family	NA
UHGV-0084207_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0084207_42	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0084207_42	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0084207_42	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0084207_43	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0084207_43	UniRef90	UniRef90_A0A2X2UNU1	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0084207_43	eggNOG-mapper	585394.RHOM_15640	Replication initiator protein A	NA
UHGV-0084207_43	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0084207_43	Pfam	PF19481	NA	DUF6017
UHGV-0084207_43	Structural annotation	PF19481, PF06970, COG5625	NA	NA
UHGV-0084207_44	UniRef90	UniRef90_A0A417B1F6	ABC transporter permease	NA
UHGV-0084207_44	eggNOG-mapper	585394.RHOM_15635	NA	NA
UHGV-0084207_44	AcrCatalog	cluster_10190	NA	NA
UHGV-0084207_44	Pfam	PF19517	NA	DUF6050
UHGV-0084207_45	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0084207_45	UniRef90	UniRef90_R5E4A4	HTH cro/C1-type domain-containing protein	NA
UHGV-0084207_45	eggNOG-mapper	585394.RHOM_15630	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084207_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084207_45	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0084207_45	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0084207_46	eggNOG-mapper	585394.RHOM_15620	NA	NA
UHGV-0084207_47	eggNOG-mapper	1235799.C818_03924	NA	NA
UHGV-0084207_48	UniRef90	UniRef90_UPI001DBEF1FC	NA	NA