UHGV-0084228

Genome information

Genome length 17,732 bps

CDS count 28

Completeness 100.00% (complete)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084228
vOTU ID	vOTU-045208
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157239
BioSample	SAMEA2784473
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.38
Jumbo phage	No

Genome content
Genome length	17,732 bps
GC content	36.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	88.77%
Average CDS length	566.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084228_1	PHROG	phrog_2150	terminase	head and packaging
UHGV-0084228_1	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0084228_1	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0084228_1	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0084228_1	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0084228_5	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0084228_5	Structural annotation	PF01471	NA	NA
UHGV-0084228_6	PHROG	phrog_11037	NA	unknown function
UHGV-0084228_6	eggNOG-mapper	641107.CDLVIII_5942	SH3, type 3 domain protein	NA
UHGV-0084228_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0084228_6	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0084228_6	COG	COG3942	Surface antigen	NA
UHGV-0084228_6	Structural annotation	PF18013, COG3942	NA	NA
UHGV-0084228_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0084228_8	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0084228_8	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0084228_8	Structural annotation	PF05065, PF02368, MF_04119, NF033394, COG4653	NA	NA
UHGV-0084228_9	PHROG	phrog_2248	tail protein	tail
UHGV-0084228_9	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0084228_9	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0084228_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0084228_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0084228_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0084228_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0084228_10	UniRef90	UniRef90_A6XAD7	Upper collar	NA
UHGV-0084228_10	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0084228_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0084228_10	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0084228_11	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0084228_11	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-0084228_11	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0084228_12	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0084228_12	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0084228_17	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0084228_17	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0084228_17	UniRef90	UniRef90_A0A011UWU5	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0084228_17	eggNOG-mapper	1450694.BTS2_3268	Deoxyuridine 5'-triphosphate	NA
UHGV-0084228_17	Pfam	PF00692	dUTPase	dUTPase
UHGV-0084228_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0084228_17	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0084228_18	Structural annotation	PF03685, MF_00342	NA	NA
UHGV-0084228_19	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0084228_19	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0084228_19	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0084228_19	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0084228_19	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0084228_19	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0084228_22	Structural annotation	PF17427	NA	NA
UHGV-0084228_23	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084228_23	Structural annotation	PF17548	NA	NA
UHGV-0084228_28	Structural annotation	COG2178	NA	NA