UHGV-0084259

Genome information

Genome length 17,695 bps

CDS count 27

Completeness 94.69% (high-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084259
vOTU ID	vOTU-009371
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_145198
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.6
Jumbo phage	No

Genome content
Genome length	17,695 bps
GC content	35.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	92.37%
Average CDS length	608.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084259_1	PHROG	phrog_2150	terminase	head and packaging
UHGV-0084259_1	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0084259_1	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0084259_1	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0084259_1	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0084259_5	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-0084259_5	Structural annotation	PF01471	NA	NA
UHGV-0084259_6	PHROG	phrog_11037	NA	unknown function
UHGV-0084259_6	UniRef90	UniRef90_A0A413K5U9	CHAP domain-containing protein	NA
UHGV-0084259_6	eggNOG-mapper	552396.HMPREF0863_01358	CHAP domain	NA
UHGV-0084259_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0084259_6	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0084259_6	COG	COG3942	Surface antigen	NA
UHGV-0084259_6	Structural annotation	PF18013, COG3942	NA	NA
UHGV-0084259_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0084259_8	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0084259_8	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0084259_8	Structural annotation	PF05065, PF02368, MF_04119, NF033394, COG4653	NA	NA
UHGV-0084259_9	PHROG	phrog_2248	tail protein	tail
UHGV-0084259_9	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0084259_9	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0084259_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0084259_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0084259_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0084259_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0084259_10	UniRef90	UniRef90_A6XAD7	Upper collar	NA
UHGV-0084259_10	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0084259_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0084259_11	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0084259_11	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0084259_11	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0084259_12	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0084259_14	Structural annotation	PF05014, MF_03036, TIGR03646, COG3340	NA	NA
UHGV-0084259_17	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0084259_17	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0084259_17	UniRef90	UniRef90_A0A011UWU5	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0084259_17	eggNOG-mapper	1450694.BTS2_3268	Deoxyuridine 5'-triphosphate	NA
UHGV-0084259_17	Pfam	PF00692	dUTPase	dUTPase
UHGV-0084259_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0084259_17	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0084259_18	Structural annotation	PF03685, MF_00342	NA	NA
UHGV-0084259_19	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0084259_19	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0084259_19	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0084259_19	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0084259_19	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0084259_19	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0084259_22	Structural annotation	PF17427	NA	NA
UHGV-0084259_23	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084259_23	Structural annotation	PF17548	NA	NA
UHGV-0084259_27	Structural annotation	COG2178	NA	NA