UHGV-0084381

Genome information

Genome length 43,743 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084381
vOTU ID	vOTU-045212
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_160942
BioSample	SAMEA3136698
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.1
Jumbo phage	No

Genome content
Genome length	43,743 bps
GC content	37.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.34%
Average CDS length	578.56 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084381_1	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0084381_1	PHROG	phrog_670	endolysin	lysis
UHGV-0084381_1	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0084381_1	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0084381_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0084381_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0084381_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0084381_1	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0084381_2	PHROG	phrog_962	holin	lysis
UHGV-0084381_2	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0084381_2	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0084381_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0084381_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0084381_2	COG	COG5546	NA	NA
UHGV-0084381_2	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-0084381_3	Structural annotation	PF08931	NA	NA
UHGV-0084381_6	PHROG	phrog_18444	NA	unknown function
UHGV-0084381_7	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0084381_7	PHROG	phrog_6616	tail protein	tail
UHGV-0084381_7	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0084381_7	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0084381_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0084381_7	Pfam	PF15711	Interleukin-like EMT inducer	ILEI
UHGV-0084381_7	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0084381_8	PHROG	phrog_1194	NA	unknown function
UHGV-0084381_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0084381_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0084381_9	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0084381_9	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0084381_9	COG	COG5412	Phage-related protein	NA
UHGV-0084381_9	Structural annotation	PF11172	NA	NA
UHGV-0084381_10	PHROG	phrog_706	NA	unknown function
UHGV-0084381_10	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0084381_10	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0084381_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0084381_10	Structural annotation	PF06854	NA	NA
UHGV-0084381_11	PHROG	phrog_11299	NA	unknown function
UHGV-0084381_11	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0084381_11	Structural annotation	PF10666	NA	NA
UHGV-0084381_12	PHROG	phrog_3099	NA	unknown function
UHGV-0084381_12	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0084381_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0084381_13	PHROG	phrog_3266	tail completion	connector
UHGV-0084381_13	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0084381_13	Structural annotation	PF12691	NA	NA
UHGV-0084381_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0084381_14	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0084381_14	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0084381_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0084381_14	Structural annotation	PF11114	NA	NA
UHGV-0084381_15	PHROG	phrog_3366	NA	unknown function
UHGV-0084381_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0084381_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0084381_16	PHROG	phrog_1233	NA	unknown function
UHGV-0084381_16	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0084381_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0084381_17	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0084381_18	PHROG	phrog_247	major head protein	head and packaging
UHGV-0084381_18	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0084381_18	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0084381_18	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0084381_19	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0084381_19	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0084381_20	PHROG	phrog_419	NA	unknown function
UHGV-0084381_20	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0084381_20	Structural annotation	PF14083	NA	NA
UHGV-0084381_21	PHROG	phrog_1048	NA	unknown function
UHGV-0084381_21	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0084381_22	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0084381_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0084381_23	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0084381_23	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0084381_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0084381_23	COG	COG2369	NA	NA
UHGV-0084381_23	Structural annotation	PF06152	NA	NA
UHGV-0084381_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0084381_24	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0084381_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0084381_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0084381_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0084381_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0084381_26	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0084381_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0084381_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0084381_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0084381_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0084381_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0084381_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0084381_26	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0084381_27	PHROG	phrog_33130	NA	unknown function
UHGV-0084381_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0084381_28	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0084381_32	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0084381_32	UniRef90	UniRef90_UPI001BA79D8F	helix-turn-helix domain-containing protein	NA
UHGV-0084381_32	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084381_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084381_32	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0084381_36	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084381_36	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-0084381_36	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0084381_36	Pfam	PF00847	AP2 domain	AP2
UHGV-0084381_36	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-0084381_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084381_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084381_38	UniRef90	UniRef90_A0A173U128	Transcriptional regulator, y4mF family	NA
UHGV-0084381_38	eggNOG-mapper	556261.HMPREF0240_03318	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084381_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0084381_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084381_40	Structural annotation	PF14844	NA	NA
UHGV-0084381_42	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0084381_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0084381_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0084381_45	UniRef90	UniRef90_A0A173TY56	PUA domain (Predicted RNA-binding domain)	NA
UHGV-0084381_45	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0084381_45	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0084381_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0084381_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0084381_45	Structural annotation	PF01507, MF_00063, TIGR02055	NA	NA
UHGV-0084381_46	UniRef90	UniRef90_UPI001CD21EDD	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0084381_46	eggNOG-mapper	411490.ANACAC_02386	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0084381_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0084381_50	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0084381_52	UniRef90	UniRef90_A0A173TZ35	Transposase	NA
UHGV-0084381_52	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0084381_52	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0084381_52	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0084381_53	PHROG	phrog_1123	NA	unknown function
UHGV-0084381_53	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0084381_53	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0084381_53	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0084381_54	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084381_54	UniRef90	UniRef90_UPI001F3474DD	NA	NA
UHGV-0084381_54	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0084381_54	Structural annotation	PF10771, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-0084381_55	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0084381_55	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0084381_55	UniRef90	UniRef90_A0A173TYT6	Endodeoxyribonuclease RusA	NA
UHGV-0084381_55	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0084381_55	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0084381_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0084381_56	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0084381_56	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0084381_56	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0084381_57	PHROG	phrog_14970	NA	unknown function
UHGV-0084381_57	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0084381_57	eggNOG-mapper	697329.Rumal_1121	double-strand break repair protein	NA
UHGV-0084381_57	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0084381_57	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0084381_58	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0084381_58	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-0084381_58	eggNOG-mapper	683837.lse_2160	Siphovirus Gp157	NA
UHGV-0084381_58	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0084381_58	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0084381_62	PHROG	phrog_36464	NA	unknown function
UHGV-0084381_62	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0084381_62	Structural annotation	PF09035	NA	NA
UHGV-0084381_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084381_64	UniRef90	UniRef90_A0A173TZM8	Helix-turn-helix domain	NA
UHGV-0084381_64	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-0084381_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084381_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084381_65	UniRef90	UniRef90_A0A173TZ83	Helix-turn-helix domain	NA
UHGV-0084381_65	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084381_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084381_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0084381_66	PHROG	phrog_87	metallo-protease	other
UHGV-0084381_66	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0084381_66	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0084381_66	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0084381_66	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0084381_66	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0084381_67	eggNOG-mapper	397291.C804_05803	response to antibiotic	NA
UHGV-0084381_67	COG	COG4640	NA	NA
UHGV-0084381_68	KOfam	K14059	int; integrase	NA
UHGV-0084381_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0084381_68	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-0084381_68	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-0084381_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0084381_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0084381_68	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA