UHGV-0084490

Genome information

Genome length 44,725 bps

CDS count 72

Completeness 78.53% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084490
vOTU ID	vOTU-025389
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157767
BioSample	SAMEA2784480
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.69
Jumbo phage	No

Genome content
Genome length	44,725 bps
GC content	36.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	86.23%
Average CDS length	538.92 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084490_2	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0084490_2	Structural annotation	NF033819	NA	NA
UHGV-0084490_3	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0084490_4	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084490_4	UniRef90	UniRef90_UPI00189871DD	NUMOD4 domain-containing protein	NA
UHGV-0084490_4	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0084490_4	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0084490_4	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0084490_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0084490_4	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0084490_4	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0084490_5	PHROG	phrog_16490	NA	unknown function
UHGV-0084490_5	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0084490_7	PHROG	phrog_20016	NA	unknown function
UHGV-0084490_7	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0084490_7	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0084490_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0084490_8	UniRef90	UniRef90_UPI001F10428A	NA	NA
UHGV-0084490_8	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0084490_8	Structural annotation	PF19891, NF041793, COG4877	NA	NA
UHGV-0084490_9	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084490_9	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0084490_9	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0084490_10	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0084490_11	PHROG	phrog_1233	NA	unknown function
UHGV-0084490_11	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0084490_11	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0084490_11	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0084490_14	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0084490_17	Structural annotation	PF18701, NF000331, COG4014	NA	NA
UHGV-0084490_19	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0084490_19	UniRef90	UniRef90_A0A415M7P1	XRE family transcriptional regulator	NA
UHGV-0084490_19	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084490_19	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084490_19	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0084490_22	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0084490_22	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0084490_23	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0084490_23	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0084490_23	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0084490_23	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0084490_23	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0084490_23	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0084490_25	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084490_25	UniRef90	UniRef90_A0A412EKX5	Helix-turn-helix domain-containing protein	NA
UHGV-0084490_25	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-0084490_25	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0084490_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0084490_25	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0084490_26	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0084490_26	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0084490_26	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0084490_32	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0084490_32	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0084490_32	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0084490_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0084490_33	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0084490_33	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0084490_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0084490_33	COG	COG5410	NA	NA
UHGV-0084490_33	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0084490_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0084490_34	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0084490_34	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0084490_34	Pfam	PF07374	NA	DUF1492
UHGV-0084490_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0084490_34	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0084490_35	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0084490_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0084490_36	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0084490_36	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0084490_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0084490_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0084490_38	PHROG	phrog_544	major head protein	head and packaging
UHGV-0084490_38	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0084490_38	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0084490_38	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0084490_38	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0084490_39	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0084490_39	Structural annotation	PF21169	NA	NA
UHGV-0084490_41	PHROG	phrog_1863	NA	unknown function
UHGV-0084490_41	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0084490_42	PHROG	phrog_1129	holin	lysis
UHGV-0084490_42	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0084490_42	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0084490_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0084490_42	Structural annotation	PF06946	NA	NA
UHGV-0084490_43	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0084490_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0084490_44	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0084490_45	Structural annotation	PF05657	NA	NA
UHGV-0084490_46	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0084490_46	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0084490_47	PHROG	phrog_36112	NA	unknown function
UHGV-0084490_47	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0084490_47	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0084490_47	Structural annotation	PF10666	NA	NA
UHGV-0084490_49	PHROG	phrog_28918	NA	unknown function
UHGV-0084490_49	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-0084490_49	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0084490_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0084490_49	Structural annotation	PF20155	NA	NA
UHGV-0084490_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0084490_50	eggNOG-mapper	483218.BACPEC_01146	domain protein	NA
UHGV-0084490_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0084490_51	PHROG	phrog_23726	NA	unknown function
UHGV-0084490_51	UniRef90	UniRef90_A0A1M5TXV8	Zinc-ribbon domain-containing protein	NA
UHGV-0084490_51	eggNOG-mapper	1384484.AEQU_1334	cell wall organization	NA
UHGV-0084490_51	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0084490_53	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0084490_53	UniRef90	UniRef90_R7BHB1	Phage regulatory protein Rha family	NA
UHGV-0084490_53	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0084490_53	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0084490_53	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0084490_53	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0084490_53	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0084490_56	PHROG	phrog_1194	NA	unknown function
UHGV-0084490_56	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0084490_56	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0084490_57	Structural annotation	PF07761	NA	NA
UHGV-0084490_58	PHROG	phrog_6616	tail protein	tail
UHGV-0084490_58	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0084490_58	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0084490_58	COG	COG4926	Phage-related protein	NA
UHGV-0084490_58	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0084490_60	KOfam	K07273	acm; lysozyme	NA
UHGV-0084490_60	PHROG	phrog_6745	endolysin	lysis
UHGV-0084490_60	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0084490_60	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0084490_60	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0084490_60	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0084490_60	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0084490_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084490_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084490_61	UniRef90	UniRef90_A0A8D9UIK2	HTH cro/C1-type domain-containing protein	NA
UHGV-0084490_61	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084490_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084490_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084490_61	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0084490_62	UniRef90	UniRef90_A0A8D9UIR6	DNA-binding transcriptional regulator	NA
UHGV-0084490_62	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0084490_62	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0084490_63	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0084490_63	UniRef90	UniRef90_A0A285PXX7	ORF6C domain	NA
UHGV-0084490_63	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0084490_63	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0084490_63	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0084490_63	COG	COG3617	Prophage antirepressor	NA
UHGV-0084490_63	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0084490_65	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0084490_65	Structural annotation	PF10552	NA	NA
UHGV-0084490_68	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0084490_68	PHROG	phrog_26861	NA	unknown function
UHGV-0084490_68	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0084490_68	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-0084490_68	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084490_68	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0084490_68	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084490_68	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0084490_70	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0084490_70	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084490_70	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0084490_70	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0084490_70	Pfam	PF13476	AAA domain	AAA_23
UHGV-0084490_70	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0084490_70	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0084490_71	PHROG	phrog_1510	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0084490_71	UniRef90	UniRef90_F8WPQ1	Superinfection exclusion protein	NA
UHGV-0084490_71	eggNOG-mapper	10752.A0MZA8_BPN4	Pfam:Gp17	NA
UHGV-0084490_71	Pfam	PF17420	Superinfection exclusion gene product 17	GP17
UHGV-0084490_71	Structural annotation	PF17420	NA	NA
UHGV-0084490_72	PHROG	phrog_4433	NA	unknown function
UHGV-0084490_72	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0084490_72	COG	COG5164	Transcription elongation factor SPT5	NA