UHGV-0084510

Genome information

Genome length 40,286 bps

CDS count 58

Completeness 89.72% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084510
vOTU ID	vOTU-026571
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_166608
BioSample	SAMEA3136644
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.87
Jumbo phage	No

Genome content
Genome length	40,286 bps
GC content	54.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.71%
Average CDS length	642.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084510_2	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0084510_2	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0084510_2	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0084510_2	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0084510_2	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0084510_2	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0084510_2	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0084510_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0084510_3	KOfam	K24451	zim; modification methylase	NA
UHGV-0084510_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0084510_3	UniRef90	UniRef90_A0A845MWG4	Methyltransferase	NA
UHGV-0084510_3	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0084510_3	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0084510_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0084510_3	COG	COG0863	DNA modification methylase	NA
UHGV-0084510_3	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0084510_4	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0084510_4	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0084510_4	UniRef90	UniRef90_A0A845MVG4	Helicase	NA
UHGV-0084510_4	eggNOG-mapper	394503.Ccel_3060	SNF2 family N-terminal domain	NA
UHGV-0084510_4	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0084510_4	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0084510_4	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0084510_4	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0084510_6	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0084510_6	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0084510_6	UniRef90	UniRef90_A0A2T0APF7	Endodeoxyribonuclease RusA	NA
UHGV-0084510_6	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0084510_6	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0084510_6	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0084510_6	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0084510_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0084510_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0084510_7	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0084510_7	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-0084510_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0084510_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0084510_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0084510_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0084510_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084510_8	UniRef90	UniRef90_UPI000F093508	phage replication protein	NA
UHGV-0084510_8	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0084510_8	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0084510_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0084510_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084510_9	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0084510_9	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0084510_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084510_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0084510_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084510_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0084510_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0084510_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0084510_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0084510_11	PHROG	phrog_7566	NA	unknown function
UHGV-0084510_11	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0084510_11	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0084510_12	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084510_12	UniRef90	UniRef90_A0A0R2EYS7	AP2/ERF domain-containing protein	NA
UHGV-0084510_12	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0084510_12	Structural annotation	PF17375	NA	NA
UHGV-0084510_13	PHROG	phrog_1389	NA	unknown function
UHGV-0084510_13	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0084510_13	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0084510_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0084510_14	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0084510_14	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0084510_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0084510_14	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0084510_20	PHROG	phrog_4433	NA	unknown function
UHGV-0084510_20	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0084510_20	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0084510_21	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0084510_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084510_22	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0084510_22	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084510_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084510_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0084510_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0084510_23	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0084510_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084510_23	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0084510_24	UniRef90	UniRef90_UPI00189845EC	helix-turn-helix domain-containing protein	NA
UHGV-0084510_24	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0084510_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084510_24	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0084510_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084510_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084510_25	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0084510_26	KOfam	K14059	int; integrase	NA
UHGV-0084510_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0084510_26	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0084510_26	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0084510_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0084510_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0084510_26	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0084510_28	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0084510_28	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0084510_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0084510_30	PHROG	phrog_16490	NA	unknown function
UHGV-0084510_30	eggNOG-mapper	476272.RUMHYD_01954	NA	NA
UHGV-0084510_31	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084510_31	UniRef90	UniRef90_UPI0013E35C2F	NUMOD4 domain-containing protein	NA
UHGV-0084510_31	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0084510_31	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0084510_31	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0084510_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0084510_31	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0084510_31	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0084510_32	PHROG	phrog_22984	NA	unknown function
UHGV-0084510_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084510_35	PHROG	phrog_435	endolysin	lysis
UHGV-0084510_35	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0084510_35	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0084510_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0084510_35	Pfam	PF05036	SPOR domain	SPOR
UHGV-0084510_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0084510_35	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0084510_36	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0084510_36	UniRef90	UniRef90_A0A417J5P5	NA	NA
UHGV-0084510_36	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0084510_36	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0084510_37	PHROG	phrog_199	holin	lysis
UHGV-0084510_37	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0084510_37	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0084510_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0084510_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0084510_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0084510_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0084510_38	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-0084510_38	eggNOG-mapper	1423755.BAML01000004_gene368	lipolytic protein G-D-S-L family	NA
UHGV-0084510_38	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0084510_39	PHROG	phrog_372	tail protein	tail
UHGV-0084510_39	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0084510_39	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0084510_39	Pfam	PF05895	NA	DUF859
UHGV-0084510_39	COG	COG4675	Phage tail collar domain	NA
UHGV-0084510_39	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0084510_40	PHROG	phrog_6616	tail protein	tail
UHGV-0084510_40	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0084510_40	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0084510_40	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0084510_41	PHROG	phrog_1194	NA	unknown function
UHGV-0084510_41	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0084510_41	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0084510_41	Pfam	PF20458	NA	DUF6711
UHGV-0084510_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0084510_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0084510_42	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0084510_42	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0084510_42	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0084510_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0084510_43	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0084510_44	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0084510_44	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0084510_44	Pfam	PF16478	NA	DUF5055
UHGV-0084510_44	Structural annotation	PF16478	NA	NA
UHGV-0084510_45	PHROG	phrog_158	major tail protein	tail
UHGV-0084510_45	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0084510_45	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0084510_45	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0084510_45	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0084510_46	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0084510_47	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0084510_48	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0084510_49	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0084510_49	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0084510_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0084510_49	Structural annotation	TIGR01560	NA	NA
UHGV-0084510_50	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0084510_50	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0084510_50	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0084510_50	Pfam	PF17236	NA	DUF5309
UHGV-0084510_50	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0084510_52	PHROG	phrog_64	portal protein	head and packaging
UHGV-0084510_52	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0084510_52	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0084510_52	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0084510_52	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0084510_53	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0084510_53	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0084510_53	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0084510_53	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0084510_53	COG	COG5410	NA	NA
UHGV-0084510_53	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0084510_54	UniRef90	UniRef90_D5AGK7	OrfG2-1	NA
UHGV-0084510_54	eggNOG-mapper	469596.HMPREF9488_02214	NA	NA
UHGV-0084510_55	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0084510_55	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0084510_55	UniRef90	UniRef90_A0A2V2CZT0	Chromosome partitioning protein ParA	NA
UHGV-0084510_55	eggNOG-mapper	742735.HMPREF9467_03152	COG COG1192 ATPases involved in chromosome partitioning	NA
UHGV-0084510_55	Pfam	PF13614	AAA domain	AAA_31
UHGV-0084510_55	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0084510_55	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0084510_56	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0084510_56	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0084510_56	UniRef90	UniRef90_R5DEZ9	ParB-like partition proteins	NA
UHGV-0084510_56	eggNOG-mapper	1321372.AQQB01000003_gene1485	ParB-like nuclease domain	NA
UHGV-0084510_56	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0084510_56	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0084510_56	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0084510_56	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0084510_57	eggNOG-mapper	999413.HMPREF1094_00601	NA	NA
UHGV-0084510_57	Structural annotation	PF19178	NA	NA
UHGV-0084510_58	eggNOG-mapper	742735.HMPREF9467_03149	Cna protein B-type domain	NA
UHGV-0084510_58	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA