UHGV-0084521

Genome information

Genome length 33,472 bps

CDS count 53

Completeness 95.14% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084521
vOTU ID	vOTU-063307
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_139506
BioSample	SAMEA2737830
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.1
Jumbo phage	No

Genome content
Genome length	33,472 bps
GC content	38.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.01%
Average CDS length	565.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084521_1	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0084521_1	PHROG	phrog_35892	NA	unknown function
UHGV-0084521_1	UniRef90	UniRef90_R5DSQ1	Ig-like domain-containing surface protein	NA
UHGV-0084521_1	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0084521_1	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0084521_2	UniRef90	UniRef90_A0A2N0UVF0	CBM26 domain-containing protein	NA
UHGV-0084521_2	eggNOG-mapper	33905.BTHE_1898	Belongs to the glycosyl hydrolase 31 family	NA
UHGV-0084521_2	Pfam	PF16738	Starch-binding module 26	CBM26
UHGV-0084521_2	COG	COG1501	Alpha-glucosidase/xylosidase, GH31 family	NA
UHGV-0084521_6	UniRef90	UniRef90_A0A6I3PLH9	Helix-turn-helix domain-containing protein	NA
UHGV-0084521_6	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0084521_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0084521_7	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0084521_7	UniRef90	UniRef90_A0A412L7Z0	Site-specific DNA-methyltransferase	NA
UHGV-0084521_7	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-0084521_7	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0084521_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0084521_7	Structural annotation	PF13679, NF000058, COG2263	NA	NA
UHGV-0084521_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0084521_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0084521_8	UniRef90	UniRef90_A0A374DDR5	Methyltransferase	NA
UHGV-0084521_8	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-0084521_8	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0084521_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0084521_8	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0084521_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0084521_9	PHROG	phrog_291	endolysin	lysis
UHGV-0084521_9	UniRef90	UniRef90_A0A373KPS8	PG_binding_1 domain-containing protein	NA
UHGV-0084521_9	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-0084521_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0084521_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0084521_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0084521_9	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0084521_10	PHROG	phrog_443	holin	lysis
UHGV-0084521_10	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0084521_10	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0084521_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0084521_10	Structural annotation	PF16945	NA	NA
UHGV-0084521_11	PHROG	phrog_1863	NA	unknown function
UHGV-0084521_11	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0084521_11	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0084521_13	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0084521_13	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0084521_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0084521_14	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0084521_14	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0084521_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0084521_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0084521_14	COG	COG1511	NA	NA
UHGV-0084521_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0084521_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0084521_15	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0084521_15	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0084521_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0084521_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0084521_16	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0084521_16	PHROG	phrog_5218	NA	unknown function
UHGV-0084521_16	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0084521_16	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0084521_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0084521_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0084521_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0084521_17	Structural annotation	PF11836	NA	NA
UHGV-0084521_18	PHROG	phrog_88	major tail protein	tail
UHGV-0084521_18	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0084521_18	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0084521_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0084521_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0084521_19	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0084521_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0084521_19	Structural annotation	TIGR01725	NA	NA
UHGV-0084521_20	eggNOG-mapper	879305.HMPREF9290_0134	NA	NA
UHGV-0084521_20	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0084521_21	PHROG	phrog_19734	NA	unknown function
UHGV-0084521_21	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0084521_21	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0084521_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0084521_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0084521_22	PHROG	phrog_749	NA	unknown function
UHGV-0084521_22	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0084521_22	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0084521_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084521_23	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0084521_23	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0084521_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084521_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084521_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084521_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0084521_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0084521_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0084521_24	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0084521_24	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0084521_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0084521_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0084521_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0084521_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084521_25	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0084521_25	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0084521_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084521_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0084521_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0084521_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0084521_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0084521_26	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0084521_26	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0084521_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0084521_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0084521_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0084521_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0084521_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0084521_27	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0084521_27	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0084521_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0084521_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0084521_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084521_28	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0084521_28	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0084521_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0084521_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0084521_29	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0084521_29	Structural annotation	TIGR01636	NA	NA
UHGV-0084521_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084521_30	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0084521_30	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0084521_34	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0084521_34	Structural annotation	PF15597	NA	NA
UHGV-0084521_35	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084521_35	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0084521_35	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0084521_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0084521_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0084521_35	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0084521_37	PHROG	phrog_824	NA	unknown function
UHGV-0084521_37	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0084521_37	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0084521_37	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0084521_37	Structural annotation	PF08774	NA	NA
UHGV-0084521_38	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084521_38	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0084521_38	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0084521_38	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0084521_38	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0084521_38	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0084521_40	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0084521_40	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0084521_40	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0084521_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0084521_41	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0084521_41	UniRef90	UniRef90_A0A0X8H1C8	ParB domain-containing protein	NA
UHGV-0084521_41	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0084521_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0084521_41	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0084521_41	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0084521_41	Structural annotation	PF02195, PF18579, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0084521_44	Structural annotation	COG1862	NA	NA
UHGV-0084521_45	PHROG	phrog_6058	NA	unknown function
UHGV-0084521_45	Structural annotation	NF033787	NA	NA
UHGV-0084521_46	PHROG	phrog_8684	NA	unknown function
UHGV-0084521_46	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0084521_46	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-0084521_46	Pfam	PF09643	YopX protein	YopX
UHGV-0084521_46	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0084521_48	PHROG	phrog_585	NA	unknown function
UHGV-0084521_48	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0084521_48	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0084521_48	Pfam	PF10711	NA	DUF2513
UHGV-0084521_48	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0084521_50	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0084521_50	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084521_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0084521_50	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0084521_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084521_51	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0084521_51	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0084521_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084521_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084521_51	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0084521_52	PHROG	phrog_1914	NA	unknown function
UHGV-0084521_52	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0084521_52	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0084521_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0084521_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0084521_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0084521_53	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0084521_53	COG	COG1196	Chromosome segregation ATPase Smc	NA