UHGV-0084540

Genome information

Genome length 34,188 bps

CDS count 56

Completeness 81.39% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084540
vOTU ID	vOTU-017963
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157210
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.84
Jumbo phage	No

Genome content
Genome length	34,188 bps
GC content	54.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.58%
Average CDS length	549.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084540_1	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0084540_2	Structural annotation	PF12510	NA	NA
UHGV-0084540_3	PHROG	phrog_20016	NA	unknown function
UHGV-0084540_3	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0084540_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0084540_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0084540_4	PHROG	phrog_16490	NA	unknown function
UHGV-0084540_4	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0084540_5	PHROG	phrog_22984	NA	unknown function
UHGV-0084540_6	PHROG	phrog_21718	NA	unknown function
UHGV-0084540_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0084540_7	PHROG	phrog_3754	NA	unknown function
UHGV-0084540_7	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0084540_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084540_9	PHROG	phrog_435	endolysin	lysis
UHGV-0084540_9	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0084540_9	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0084540_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0084540_9	Pfam	PF05036	SPOR domain	SPOR
UHGV-0084540_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0084540_9	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0084540_10	PHROG	phrog_199	holin	lysis
UHGV-0084540_10	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0084540_10	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0084540_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0084540_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0084540_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0084540_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0084540_12	PHROG	phrog_30034	NA	unknown function
UHGV-0084540_12	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0084540_12	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-0084540_12	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0084540_13	Structural annotation	PF10651	NA	NA
UHGV-0084540_14	PHROG	phrog_372	tail protein	tail
UHGV-0084540_14	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0084540_14	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0084540_14	Pfam	PF05895	NA	DUF859
UHGV-0084540_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0084540_14	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0084540_15	PHROG	phrog_6616	tail protein	tail
UHGV-0084540_15	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0084540_15	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0084540_15	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0084540_16	PHROG	phrog_1194	NA	unknown function
UHGV-0084540_16	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0084540_16	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0084540_16	Pfam	PF20458	NA	DUF6711
UHGV-0084540_16	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0084540_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0084540_17	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0084540_17	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0084540_17	COG	COG1511	NA	NA
UHGV-0084540_17	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0084540_18	PHROG	phrog_706	NA	unknown function
UHGV-0084540_18	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0084540_18	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0084540_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0084540_18	Structural annotation	PF06854	NA	NA
UHGV-0084540_19	PHROG	phrog_11299	NA	unknown function
UHGV-0084540_19	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0084540_19	Structural annotation	PF10666	NA	NA
UHGV-0084540_20	PHROG	phrog_3099	NA	unknown function
UHGV-0084540_20	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0084540_20	Structural annotation	TIGR02126	NA	NA
UHGV-0084540_21	PHROG	phrog_3266	tail completion	connector
UHGV-0084540_21	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0084540_21	Structural annotation	PF12691	NA	NA
UHGV-0084540_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0084540_22	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0084540_22	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0084540_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0084540_22	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0084540_23	PHROG	phrog_3366	NA	unknown function
UHGV-0084540_23	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0084540_23	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0084540_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0084540_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0084540_25	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0084540_25	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0084540_25	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0084540_26	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0084540_26	Structural annotation	PF06810	NA	NA
UHGV-0084540_27	Structural annotation	PF18152	NA	NA
UHGV-0084540_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0084540_29	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0084540_29	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0084540_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0084540_29	COG	COG2369	NA	NA
UHGV-0084540_29	Structural annotation	PF06152	NA	NA
UHGV-0084540_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0084540_30	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0084540_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0084540_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0084540_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0084540_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0084540_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0084540_31	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0084540_31	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0084540_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0084540_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0084540_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0084540_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0084540_33	PHROG	phrog_21498	NA	unknown function
UHGV-0084540_33	eggNOG-mapper	865938.Weevi_0265	DNA binding	NA
UHGV-0084540_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0084540_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0084540_34	PHROG	phrog_21498	NA	unknown function
UHGV-0084540_34	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0084540_34	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0084540_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0084540_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0084540_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0084540_34	Structural annotation	PF02195, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA
UHGV-0084540_35	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0084540_35	Structural annotation	TIGR01636	NA	NA
UHGV-0084540_40	PHROG	phrog_3136	NA	unknown function
UHGV-0084540_40	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0084540_40	eggNOG-mapper	747.DR93_155	ASCH	NA
UHGV-0084540_40	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0084540_41	PHROG	phrog_38832	NA	unknown function
UHGV-0084540_41	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0084540_41	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0084540_43	Structural annotation	PF09947, NF006816, COG4830	NA	NA
UHGV-0084540_44	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0084540_46	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0084540_46	UniRef90	UniRef90_A0A1L5KS67	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0084540_46	eggNOG-mapper	479437.Elen_2611	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0084540_46	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0084540_46	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0084540_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0084540_46	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0084540_47	UniRef90	UniRef90_A0A1Q6KPR6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0084540_47	eggNOG-mapper	411473.RUMCAL_02519	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0084540_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0084540_48	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0084540_50	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0084540_50	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0084540_50	UniRef90	UniRef90_UPI001331804A	site-specific DNA-methyltransferase	NA
UHGV-0084540_50	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0084540_50	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0084540_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0084540_50	COG	COG0863	DNA modification methylase	NA
UHGV-0084540_50	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0084540_51	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0084540_51	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0084540_51	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0084540_51	Pfam	PF06356	NA	DUF1064
UHGV-0084540_51	Structural annotation	PF06356	NA	NA
UHGV-0084540_53	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0084540_53	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0084540_53	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0084540_53	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0084540_53	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0084540_53	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0084540_53	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0084540_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0084540_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084540_54	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0084540_54	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0084540_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084540_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0084540_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084540_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0084540_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0084540_55	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0084540_56	eggNOG-mapper	693746.OBV_25470	NA	NA