UHGV-0084572

Genome information

Genome length 34,480 bps

CDS count 55

Completeness 90.90% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084572
vOTU ID	vOTU-061152
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_150576
BioSample	SAMEA2784461
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.32
Jumbo phage	No

Genome content
Genome length	34,480 bps
GC content	42.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.19%
Average CDS length	597.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084572_1	PHROG	phrog_1220	head protein	head and packaging
UHGV-0084572_1	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0084572_1	Structural annotation	PF20747	NA	NA
UHGV-0084572_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0084572_2	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0084572_2	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0084572_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0084572_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0084572_3	PHROG	phrog_36410	NA	unknown function
UHGV-0084572_3	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-0084572_3	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0084572_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0084572_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0084572_3	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0084572_4	PHROG	phrog_5218	NA	unknown function
UHGV-0084572_4	UniRef90	UniRef90_A0A1Y4GYF9	PhageMin_Tail domain-containing protein	NA
UHGV-0084572_4	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0084572_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0084572_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0084572_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0084572_7	PHROG	phrog_88	major tail protein	tail
UHGV-0084572_7	UniRef90	UniRef90_A0A2T0LCM5	Phi13 family phage major tail protein	NA
UHGV-0084572_7	eggNOG-mapper	66692.ABC1339	phage major tail protein, phi13 family	NA
UHGV-0084572_7	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0084572_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0084572_7	COG	COG5492	NA	NA
UHGV-0084572_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0084572_8	Structural annotation	PF05657	NA	NA
UHGV-0084572_9	Structural annotation	TIGR01725	NA	NA
UHGV-0084572_10	PHROG	phrog_25	head closure Hc1	connector
UHGV-0084572_10	UniRef90	UniRef90_R6NQX3	Putative phage head-tail adaptor	NA
UHGV-0084572_10	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0084572_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0084572_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0084572_11	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0084572_11	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0084572_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0084572_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0084572_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084572_12	UniRef90	UniRef90_R6NN39	Phage major capsid protein HK97 family	NA
UHGV-0084572_12	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0084572_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084572_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084572_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084572_12	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0084572_13	KOfam	K06904	NA	NA
UHGV-0084572_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0084572_13	UniRef90	UniRef90_R6PV53	HK97 family phage prohead protease	NA
UHGV-0084572_13	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0084572_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0084572_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0084572_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0084572_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0084572_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084572_14	UniRef90	UniRef90_R6P552	Phage portal protein	NA
UHGV-0084572_14	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0084572_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084572_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0084572_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0084572_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0084572_15	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0084572_15	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0084572_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0084572_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0084572_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0084572_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0084572_16	PHROG	phrog_1066	NA	unknown function
UHGV-0084572_17	PHROG	phrog_933	NA	unknown function
UHGV-0084572_18	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0084572_18	UniRef90	UniRef90_R6NCD1	HNH domain-containing protein	NA
UHGV-0084572_18	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0084572_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0084572_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0084572_18	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0084572_19	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0084572_19	PHROG	phrog_2649	endolysin	lysis
UHGV-0084572_19	UniRef90	UniRef90_R6ZH33	Peptidase_M15_4 domain-containing protein	NA
UHGV-0084572_19	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0084572_19	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0084572_19	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0084572_19	Structural annotation	PF02557, PF18342, MF_01924, NF007557, COG4991, COG2173	NA	NA
UHGV-0084572_20	PHROG	phrog_443	holin	lysis
UHGV-0084572_20	UniRef90	UniRef90_A0A315ZUA7	Phage r1t holin	NA
UHGV-0084572_20	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0084572_20	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0084572_20	Structural annotation	PF16945	NA	NA
UHGV-0084572_21	PHROG	phrog_4105	NA	unknown function
UHGV-0084572_21	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0084572_22	UniRef90	UniRef90_A0A011UAK9	Antitoxin	NA
UHGV-0084572_23	Structural annotation	PF10618, MF_01370	NA	NA
UHGV-0084572_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0084572_25	UniRef90	UniRef90_A0A0A7RTX1	Terminase small subunit	NA
UHGV-0084572_25	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0084572_25	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0084572_25	Structural annotation	PF07141	NA	NA
UHGV-0084572_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0084572_26	Structural annotation	PF06530, TIGR02937, COG2739	NA	NA
UHGV-0084572_27	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0084572_27	PHROG	phrog_5889	NA	unknown function
UHGV-0084572_27	UniRef90	UniRef90_A0A417K786	HD domain-containing protein	NA
UHGV-0084572_27	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0084572_27	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0084572_27	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0084572_28	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0084572_28	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0084572_28	UniRef90	UniRef90_UPI00189920FD	N-6 DNA methylase	NA
UHGV-0084572_28	eggNOG-mapper	1095750.HMPREF9970_0172	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0084572_28	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0084572_28	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0084572_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0084572_28	Structural annotation	PF02384, TIGR00497, COG0286	NA	NA
UHGV-0084572_29	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0084572_29	UniRef90	UniRef90_UPI00164BDD89	N-6 DNA methylase	NA
UHGV-0084572_29	eggNOG-mapper	1095750.HMPREF9970_0171	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0084572_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0084572_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0084572_29	Structural annotation	PF02475, MF_02217, NF000058, COG2263	NA	NA
UHGV-0084572_31	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-0084572_31	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0084572_32	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0084572_35	PHROG	phrog_15077	NA	unknown function
UHGV-0084572_35	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0084572_35	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0084572_35	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0084572_36	PHROG	phrog_8470	NA	unknown function
UHGV-0084572_36	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-0084572_36	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0084572_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0084572_36	Structural annotation	PF14284	NA	NA
UHGV-0084572_37	PHROG	phrog_4433	NA	unknown function
UHGV-0084572_37	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0084572_37	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0084572_37	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0084572_38	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0084572_39	PHROG	phrog_874	NA	unknown function
UHGV-0084572_39	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0084572_39	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0084572_39	Structural annotation	PF04266, MF_00684, NF003443, COG3097	NA	NA
UHGV-0084572_40	PHROG	phrog_20593	NA	unknown function
UHGV-0084572_41	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0084572_41	UniRef90	UniRef90_A0A1C5TF07	NA	NA
UHGV-0084572_41	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0084572_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0084572_41	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0084572_41	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0084572_42	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084572_42	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0084572_42	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0084572_43	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0084572_43	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0084572_43	UniRef90	UniRef90_A0A416Z2U3	RNase H type-1 domain-containing protein	NA
UHGV-0084572_43	eggNOG-mapper	1547445.LO80_09595	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0084572_43	Pfam	PF00075	RNase H	RNase_H
UHGV-0084572_43	COG	COG0328	Ribonuclease HI	NA
UHGV-0084572_43	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0084572_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084572_44	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0084572_44	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0084572_49	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0084572_52	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0084572_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0084572_52	UniRef90	UniRef90_A0A3R6UL37	XRE family transcriptional regulator	NA
UHGV-0084572_52	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0084572_52	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0084572_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084572_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0084572_54	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0084572_54	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0084572_54	UniRef90	UniRef90_A0A1Q9J502	Toxin HicA	NA
UHGV-0084572_54	eggNOG-mapper	397287.C807_02050	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0084572_54	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0084572_54	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0084572_54	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0084572_55	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0084572_55	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0084572_55	UniRef90	UniRef90_A0A1Q9J536	Antitoxin HicB	NA
UHGV-0084572_55	eggNOG-mapper	397290.C810_04356	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0084572_55	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0084572_55	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0084572_55	Structural annotation	PF15919, COG1598	NA	NA