UHGV-0084575

Genome information

Genome length 26,845 bps

CDS count 33

Completeness 69.67% (medium-quality)

geNomad score 0.9612

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084575
vOTU ID	vOTU-021766
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_145108
BioSample	SAMEA2737688
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9612
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.26
Jumbo phage	No

Genome content
Genome length	26,845 bps
GC content	40.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.17%
Average CDS length	761.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084575_1	PHROG	phrog_35590	NA	unknown function
UHGV-0084575_1	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0084575_4	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0084575_4	UniRef90	UniRef90_A0A354K455	Prophage_tailD1 domain-containing protein	NA
UHGV-0084575_4	eggNOG-mapper	1443125.Z962_p0068	Prophage endopeptidase tail	NA
UHGV-0084575_4	COG	COG4926	Phage-related protein	NA
UHGV-0084575_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0084575_6	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0084575_6	PHROG	phrog_5218	NA	unknown function
UHGV-0084575_6	UniRef90	UniRef90_A0A1G5CPJ5	Phage-related minor tail protein	NA
UHGV-0084575_6	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0084575_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0084575_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0084575_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0084575_7	Structural annotation	PF11836	NA	NA
UHGV-0084575_8	PHROG	phrog_88	major tail protein	tail
UHGV-0084575_8	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0084575_8	COG	COG5492	NA	NA
UHGV-0084575_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0084575_9	Structural annotation	TIGR01725	NA	NA
UHGV-0084575_10	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0084575_11	PHROG	phrog_19734	NA	unknown function
UHGV-0084575_11	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0084575_11	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0084575_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0084575_12	PHROG	phrog_749	NA	unknown function
UHGV-0084575_12	UniRef90	UniRef90_A0A396SIZ8	Phage gp6-like head-tail connector protein	NA
UHGV-0084575_12	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0084575_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084575_13	UniRef90	UniRef90_A0A7X5E289	Phage major capsid protein	NA
UHGV-0084575_13	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0084575_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084575_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084575_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084575_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0084575_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0084575_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0084575_14	UniRef90	UniRef90_A0A1M5U0P6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0084575_14	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0084575_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0084575_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0084575_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0084575_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084575_15	UniRef90	UniRef90_R4K0V5	Phage portal protein, HK97 family	NA
UHGV-0084575_15	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0084575_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084575_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0084575_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0084575_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0084575_16	UniRef90	UniRef90_A0A318XNK0	Phage terminase large subunit-like protein	NA
UHGV-0084575_16	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0084575_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0084575_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0084575_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0084575_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0084575_17	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0084575_17	UniRef90	UniRef90_UPI000C06AD39	P27 family phage terminase small subunit	NA
UHGV-0084575_17	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0084575_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0084575_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0084575_21	Structural annotation	PF13613	NA	NA
UHGV-0084575_22	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0084575_22	UniRef90	UniRef90_UPI0003534516	DnaD domain protein	NA
UHGV-0084575_22	eggNOG-mapper	1139219.I569_01402	DnaD domain protein	NA
UHGV-0084575_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0084575_22	Structural annotation	TIGR01714	NA	NA
UHGV-0084575_26	Structural annotation	PF10743	NA	NA
UHGV-0084575_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0084575_27	UniRef90	UniRef90_A0A352TI38	Bro-N domain-containing protein	NA
UHGV-0084575_27	eggNOG-mapper	1462526.BN990_03845	BRO family, N-terminal domain	NA
UHGV-0084575_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0084575_27	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0084575_27	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0084575_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084575_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084575_28	UniRef90	UniRef90_R5V072	DNA-binding protein	NA
UHGV-0084575_28	eggNOG-mapper	313612.L8106_21844	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084575_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0084575_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084575_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0084575_28	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0084575_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084575_29	UniRef90	UniRef90_R5V696	Helix-turn-helix family protein	NA
UHGV-0084575_29	eggNOG-mapper	1123315.AUIP01000003_gene199	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084575_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084575_29	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0084575_30	PHROG	phrog_1847	NA	unknown function
UHGV-0084575_30	UniRef90	UniRef90_R5UZ85	T5orf172 domain-containing protein	NA
UHGV-0084575_30	eggNOG-mapper	1232443.BAIA02000080_gene905	T5orf172	NA
UHGV-0084575_30	Pfam	PF13250	NA	DUF4041
UHGV-0084575_30	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0084575_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0084575_30	Structural annotation	PF19962	NA	NA
UHGV-0084575_32	PHROG	phrog_12156	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0084575_32	UniRef90	UniRef90_U2M371	Divergent AAA domain protein	NA
UHGV-0084575_32	eggNOG-mapper	411473.RUMCAL_01459	Putative ATP-dependent DNA helicase recG C-terminal	NA
UHGV-0084575_32	PADLOC	pAgo-associated_WP_028057923.1	Class I	Argonaute
UHGV-0084575_32	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-0084575_32	Pfam	PF13749	Putative ATP-dependent DNA helicase recG C-terminal	HATPase_c_4
UHGV-0084575_32	Pfam	PF13463	Winged helix DNA-binding domain	HTH_27
UHGV-0084575_32	Pfam	PF09339	IclR helix-turn-helix domain	HTH_IclR
UHGV-0084575_32	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0084575_32	Structural annotation	PF04326, PF02295, PF13749, MF_01177, NF041852, COG2865	NA	NA
UHGV-0084575_33	KOfam	K14059	int; integrase	NA
UHGV-0084575_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0084575_33	UniRef90	UniRef90_A0A7X9GK55	Site-specific integrase	NA
UHGV-0084575_33	eggNOG-mapper	1007096.BAGW01000006_gene1761	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0084575_33	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0084575_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0084575_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0084575_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA