UHGV-0084581

Genome information

Genome length 21,591 bps

CDS count 41

Completeness 62.75% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084581
vOTU ID	vOTU-041531
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_145121
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.06
Jumbo phage	No

Genome content
Genome length	21,591 bps
GC content	60.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	89.72%
Average CDS length	476.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084581_1	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0084581_1	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0084581_1	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0084581_2	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084581_2	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0084581_2	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0084581_7	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0084581_8	Structural annotation	PF02882, MF_01576, NF010775, COG0190	NA	NA
UHGV-0084581_9	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0084581_9	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0084581_9	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0084581_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0084581_9	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0084581_10	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0084581_10	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0084581_10	UniRef90	UniRef90_UPI001D07FBC5	dUTP diphosphatase	NA
UHGV-0084581_10	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0084581_10	Pfam	PF00692	dUTPase	dUTPase
UHGV-0084581_10	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0084581_10	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0084581_10	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0084581_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0084581_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084581_11	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-0084581_11	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0084581_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084581_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0084581_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084581_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0084581_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0084581_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0084581_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0084581_13	UniRef90	UniRef90_UPI001EDE8D5F	replicative DNA helicase	NA
UHGV-0084581_13	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0084581_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0084581_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0084581_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0084581_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0084581_14	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084581_14	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-0084581_14	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-0084581_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0084581_14	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0084581_16	PHROG	phrog_6058	NA	unknown function
UHGV-0084581_16	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0084581_16	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0084581_19	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0084581_19	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0084581_19	UniRef90	UniRef90_A0A1Y4RX49	HTH cro/C1-type domain-containing protein	NA
UHGV-0084581_19	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0084581_19	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0084581_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084581_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084581_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0084581_22	PHROG	phrog_38135	NA	unknown function
UHGV-0084581_22	eggNOG-mapper	1151292.QEW_0647	NA	NA
UHGV-0084581_22	Pfam	PF14020	NA	DUF4236
UHGV-0084581_22	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0084581_23	KOfam	K14059	int; integrase	NA
UHGV-0084581_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0084581_23	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-0084581_23	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0084581_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0084581_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0084581_23	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0084581_24	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0084581_25	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0084581_26	PHROG	phrog_16490	NA	unknown function
UHGV-0084581_26	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0084581_28	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0084581_31	PHROG	phrog_25567	NA	unknown function
UHGV-0084581_31	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0084581_31	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0084581_31	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0084581_34	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0084581_34	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0084581_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084581_35	PHROG	phrog_5182	endolysin	lysis
UHGV-0084581_35	UniRef90	UniRef90_UPI001EE14AF5	peptidoglycan recognition protein family protein	NA
UHGV-0084581_35	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0084581_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0084581_35	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0084581_35	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0084581_37	PHROG	phrog_1129	holin	lysis
UHGV-0084581_37	UniRef90	UniRef90_UPI001EDED0D7	phage holin family protein	NA
UHGV-0084581_37	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0084581_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0084581_37	Structural annotation	PF06946	NA	NA
UHGV-0084581_38	PHROG	phrog_4105	NA	unknown function
UHGV-0084581_38	eggNOG-mapper	1321782.HMPREF1986_02281	NA	NA
UHGV-0084581_39	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0084581_40	eggNOG-mapper	2754.EH55_00535	NA	NA