UHGV-0084639

Genome information

Genome length 58,239 bps

CDS count 80

Completeness 95.33% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084639
vOTU ID	vOTU-065880
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151481
BioSample	SAMEA2784493
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.82
Jumbo phage	No

Genome content
Genome length	58,239 bps
GC content	36.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	92.50%
Average CDS length	675.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084639_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084639_1	PHROG	phrog_670	endolysin	lysis
UHGV-0084639_1	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0084639_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0084639_1	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0084639_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0084639_2	KOfam	K14059	int; integrase	NA
UHGV-0084639_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0084639_2	UniRef90	UniRef90_A0A5B3G8B3	Tyrosine-type recombinase/integrase	NA
UHGV-0084639_2	eggNOG-mapper	742733.HMPREF9469_05096	Belongs to the 'phage' integrase family	NA
UHGV-0084639_2	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0084639_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0084639_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0084639_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0084639_3	PHROG	phrog_6058	NA	unknown function
UHGV-0084639_3	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0084639_3	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0084639_4	PHROG	phrog_11237	NA	unknown function
UHGV-0084639_4	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-0084639_6	Structural annotation	PF21732	NA	NA
UHGV-0084639_12	PHROG	phrog_17256	NA	unknown function
UHGV-0084639_12	eggNOG-mapper	428125.CLOLEP_01353	NA	NA
UHGV-0084639_16	PHROG	phrog_2152	NA	unknown function
UHGV-0084639_16	UniRef90	UniRef90_UPI00156E0E4E	NA	NA
UHGV-0084639_16	eggNOG-mapper	742740.HMPREF9474_02314	NA	NA
UHGV-0084639_16	Pfam	PF19880	NA	DUF6353
UHGV-0084639_16	Structural annotation	PF19880	NA	NA
UHGV-0084639_18	PHROG	phrog_4079	NA	unknown function
UHGV-0084639_18	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-0084639_19	PHROG	phrog_2152	NA	unknown function
UHGV-0084639_19	UniRef90	UniRef90_UPI0012B3E689	NA	NA
UHGV-0084639_19	eggNOG-mapper	742740.HMPREF9474_02310	NA	NA
UHGV-0084639_19	Pfam	PF19880	NA	DUF6353
UHGV-0084639_19	Structural annotation	PF19880	NA	NA
UHGV-0084639_21	PHROG	phrog_4695	NA	unknown function
UHGV-0084639_21	eggNOG-mapper	665950.HMPREF1025_01953	NA	NA
UHGV-0084639_22	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0084639_22	UniRef90	UniRef90_A0A413DNS1	SF3 helicase domain-containing protein	NA
UHGV-0084639_22	eggNOG-mapper	742740.HMPREF9474_02303	NA	NA
UHGV-0084639_22	Pfam	PF19263	NA	DUF5906
UHGV-0084639_22	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-0084639_23	UniRef90	UniRef90_UPI000562F772	NA	NA
UHGV-0084639_23	eggNOG-mapper	1410631.JHWZ01000007_gene602	NA	NA
UHGV-0084639_23	Pfam	PF18941	NA	DUF5688
UHGV-0084639_23	Structural annotation	PF18941, MF_01548, NF010189, COG4848	NA	NA
UHGV-0084639_26	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0084639_26	UniRef90	UniRef90_A0A7X7CP10	Bro-N domain-containing protein	NA
UHGV-0084639_26	eggNOG-mapper	428125.CLOLEP_01377	NA	NA
UHGV-0084639_26	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0084639_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0084639_27	UniRef90	UniRef90_UPI001D08DE3D	DEAD/DEAH box helicase family protein	NA
UHGV-0084639_27	eggNOG-mapper	742740.HMPREF9474_02299	Helicase conserved C-terminal domain	NA
UHGV-0084639_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0084639_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0084639_27	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0084639_28	PHROG	phrog_19852	NA	unknown function
UHGV-0084639_28	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-0084639_29	Structural annotation	PF20930	NA	NA
UHGV-0084639_30	Structural annotation	PF20930	NA	NA
UHGV-0084639_32	PHROG	phrog_2152	NA	unknown function
UHGV-0084639_32	UniRef90	UniRef90_UPI00195869ED	NA	NA
UHGV-0084639_32	eggNOG-mapper	742740.HMPREF9474_02318	NA	NA
UHGV-0084639_32	Pfam	PF19880	NA	DUF6353
UHGV-0084639_32	Structural annotation	PF19880	NA	NA
UHGV-0084639_36	Structural annotation	PF05014, MF_03036, TIGR03646, COG3340	NA	NA
UHGV-0084639_37	PHROG	phrog_6721	NA	unknown function
UHGV-0084639_37	eggNOG-mapper	742740.HMPREF9474_02288	NA	NA
UHGV-0084639_37	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0084639_39	KOfam	K03630	radC; DNA repair protein RadC	NA
UHGV-0084639_39	PHROG	phrog_10276	DNA repair protein	DNA, RNA and nucleotide metabolism
UHGV-0084639_39	UniRef90	UniRef90_UPI00164BE26B	JAB domain-containing protein	NA
UHGV-0084639_39	eggNOG-mapper	1410624.JNKK01000048_gene1385	RadC-like JAB domain	NA
UHGV-0084639_39	Pfam	PF04002	RadC-like JAB domain	RadC
UHGV-0084639_39	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0084639_39	Structural annotation	PF04002, MF_00018, TIGR00608, COG2003	NA	NA
UHGV-0084639_43	PHROG	phrog_28813	NA	unknown function
UHGV-0084639_45	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0084639_45	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0084639_45	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0084639_48	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0084639_50	UniRef90	UniRef90_UPI000CF8F0F1	NA	NA
UHGV-0084639_50	eggNOG-mapper	1273103.NM10_02357	Protein conserved in bacteria	NA
UHGV-0084639_50	Pfam	PF07866	NA	DUF1653
UHGV-0084639_50	COG	COG4728	NA	NA
UHGV-0084639_50	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0084639_54	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0084639_54	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0084639_55	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084639_55	UniRef90	UniRef90_A0A374ABF7	NA	NA
UHGV-0084639_55	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-0084639_55	Pfam	PF10926	NA	DUF2800
UHGV-0084639_55	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0084639_56	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0084639_56	UniRef90	UniRef90_A0A3A9IVX2	Helix-turn-helix domain-containing protein	NA
UHGV-0084639_56	eggNOG-mapper	665956.HMPREF1032_00665	Bacterial regulatory proteins, luxR family	NA
UHGV-0084639_56	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0084639_56	Structural annotation	PF05183	NA	NA
UHGV-0084639_57	PHROG	phrog_4303	NA	unknown function
UHGV-0084639_57	eggNOG-mapper	411460.RUMTOR_01355	NA	NA
UHGV-0084639_58	PHROG	phrog_4259	NA	unknown function
UHGV-0084639_58	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA
UHGV-0084639_59	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084639_59	eggNOG-mapper	411460.RUMTOR_01352	NA	NA
UHGV-0084639_60	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0084639_60	UniRef90	UniRef90_D4P7N2	Gp014	NA
UHGV-0084639_60	eggNOG-mapper	478749.BRYFOR_08528	NA	NA
UHGV-0084639_61	PHROG	phrog_7021	NA	unknown function
UHGV-0084639_62	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0084639_62	UniRef90	UniRef90_A0A448W3Y1	Phage terminase-like protein, large subunit	NA
UHGV-0084639_62	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0084639_62	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0084639_62	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0084639_62	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0084639_64	UniRef90	UniRef90_UPI00156F086B	zinc ribbon domain-containing protein	NA
UHGV-0084639_64	eggNOG-mapper	1280682.AUKA01000018_gene2354	NA	NA
UHGV-0084639_64	Structural annotation	TIGR01206, COG1996	NA	NA
UHGV-0084639_65	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084639_65	UniRef90	UniRef90_A0A7V7AAV0	Phage portal protein	NA
UHGV-0084639_65	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-0084639_65	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084639_65	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0084639_66	KOfam	K06904	NA	NA
UHGV-0084639_66	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0084639_66	UniRef90	UniRef90_A0A1Y4MXD5	Phage major capsid protein	NA
UHGV-0084639_66	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0084639_66	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0084639_66	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0084639_67	PHROG	phrog_4270	NA	unknown function
UHGV-0084639_67	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-0084639_67	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0084639_68	PHROG	phrog_78	tail terminator	connector
UHGV-0084639_68	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-0084639_68	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-0084639_68	Structural annotation	PF20765	NA	NA
UHGV-0084639_69	PHROG	phrog_2645	major tail protein	tail
UHGV-0084639_69	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0084639_69	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0084639_69	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0084639_70	PHROG	phrog_4282	NA	unknown function
UHGV-0084639_70	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0084639_71	PHROG	phrog_4338	NA	unknown function
UHGV-0084639_71	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0084639_72	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0084639_72	UniRef90	UniRef90_UPI00156FFFD8	HK97 gp10 family phage protein	NA
UHGV-0084639_72	eggNOG-mapper	411460.RUMTOR_01336	NA	NA
UHGV-0084639_72	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0084639_72	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0084639_73	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0084639_73	UniRef90	UniRef90_A0A351RFM5	TMP_3 domain-containing protein	NA
UHGV-0084639_73	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-0084639_73	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0084639_73	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0084639_73	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0084639_73	COG	COG5412	Phage-related protein	NA
UHGV-0084639_74	UniRef90	UniRef90_A0A2V1JUJ4	Fibronectin type-III domain-containing protein	NA
UHGV-0084639_74	eggNOG-mapper	478749.BRYFOR_08512	Fibronectin type 3 domain	NA
UHGV-0084639_74	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0084639_74	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0084639_75	PHROG	phrog_26795	NA	unknown function
UHGV-0084639_75	UniRef90	UniRef90_UPI001C38532D	phage tail protein	NA
UHGV-0084639_75	eggNOG-mapper	478749.BRYFOR_08511	NA	NA
UHGV-0084639_75	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0084639_76	eggNOG-mapper	478749.BRYFOR_08510	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0084639_76	COG	COG4926	Phage-related protein	NA
UHGV-0084639_76	Structural annotation	PF18614, COG1585	NA	NA
UHGV-0084639_77	Structural annotation	PF07041	NA	NA
UHGV-0084639_79	PHROG	phrog_1129	holin	lysis
UHGV-0084639_79	UniRef90	UniRef90_A0A414P831	Holin	NA
UHGV-0084639_79	eggNOG-mapper	478749.BRYFOR_08506	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0084639_79	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0084639_79	Structural annotation	PF06946	NA	NA