UHGV-0084657

Genome information

Genome length 53,922 bps

CDS count 63

Completeness 85.17% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084657
vOTU ID	vOTU-018661
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_149499
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.64
Jumbo phage	No

Genome content
Genome length	53,922 bps
GC content	41.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.79%
Average CDS length	797.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084657_2	UniRef90	UniRef90_A0A7D7IT14	VgrG protein	NA
UHGV-0084657_4	UniRef90	UniRef90_A0A1M5CEU8	NA	NA
UHGV-0084657_4	eggNOG-mapper	908937.Prede_2356	NA	NA
UHGV-0084657_5	eggNOG-mapper	1347393.HG726020_gene1836	NA	NA
UHGV-0084657_7	PHROG	phrog_14770	NA	unknown function
UHGV-0084657_7	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-0084657_7	Pfam	PF18809	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1	PBECR1
UHGV-0084657_7	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0084657_7	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0084657_7	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0084657_7	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0084657_9	KOfam	K09511	DNAJB5; DnaJ homolog subfamily B member 5	NA
UHGV-0084657_9	PHROG	phrog_14336	NA	unknown function
UHGV-0084657_9	UniRef90	UniRef90_A0A6I2NHH7	DnaJ domain-containing protein	NA
UHGV-0084657_9	eggNOG-mapper	1286632.P278_19630	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-0084657_9	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0084657_9	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0084657_9	Structural annotation	PF00226, PF20545, MF_00682, NF010870, COG2214, COG3126	NA	NA
UHGV-0084657_12	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0084657_12	UniRef90	UniRef90_A0A496DXG2	KilA-N domain-containing protein	NA
UHGV-0084657_12	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0084657_12	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0084657_12	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0084657_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0084657_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0084657_13	UniRef90	UniRef90_A0A3R5XBS7	Phage antirepressor Ant	NA
UHGV-0084657_13	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-0084657_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0084657_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0084657_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0084657_13	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0084657_14	PHROG	phrog_22658	NA	unknown function
UHGV-0084657_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-0084657_16	eggNOG-mapper	1121098.HMPREF1534_01127	NA	NA
UHGV-0084657_16	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0084657_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0084657_17	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-0084657_17	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0084657_17	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0084657_17	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0084657_18	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0084657_18	COG	COG0705	Membrane-associated serine protease, rhomboid family	NA
UHGV-0084657_18	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0084657_19	PHROG	phrog_27246	NA	unknown function
UHGV-0084657_19	eggNOG-mapper	1347393.HG726020_gene1831	NA	NA
UHGV-0084657_20	PHROG	phrog_22323	NA	unknown function
UHGV-0084657_20	eggNOG-mapper	1347393.HG726020_gene1830	NA	NA
UHGV-0084657_21	PHROG	phrog_26635	NA	unknown function
UHGV-0084657_21	UniRef90	UniRef90_UPI001C38231A	NA	NA
UHGV-0084657_21	eggNOG-mapper	1347393.HG726020_gene1829	NA	NA
UHGV-0084657_21	Pfam	PF17236	NA	DUF5309
UHGV-0084657_21	Structural annotation	PF17236, MF_04133, TIGR01554, COG4834	NA	NA
UHGV-0084657_23	PHROG	phrog_22135	NA	unknown function
UHGV-0084657_23	eggNOG-mapper	679191.HMPREF9018_0450	NA	NA
UHGV-0084657_23	Structural annotation	PF17212	NA	NA
UHGV-0084657_24	UniRef90	UniRef90_UPI001BDF6171	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0084657_24	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-0084657_24	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0084657_26	PHROG	phrog_9391	NA	unknown function
UHGV-0084657_26	UniRef90	UniRef90_UPI001C38A0C8	CotH kinase family protein	NA
UHGV-0084657_26	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-0084657_26	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0084657_27	KOfam	K13730	inlA; internalin A	NA
UHGV-0084657_27	Structural annotation	NF033190, COG4886	NA	NA
UHGV-0084657_29	PHROG	phrog_15037	NA	unknown function
UHGV-0084657_29	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0084657_29	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0084657_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0084657_30	PHROG	phrog_873	endolysin	head and packaging
UHGV-0084657_30	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-0084657_30	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-0084657_31	PHROG	phrog_32732	NA	unknown function
UHGV-0084657_31	UniRef90	UniRef90_R6YL95	Conserved domain protein	NA
UHGV-0084657_31	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0084657_31	dbAPIS	APIS052	NA	NA
UHGV-0084657_31	Structural annotation	PF10458	NA	NA
UHGV-0084657_32	PHROG	phrog_26448	NA	unknown function
UHGV-0084657_32	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-0084657_32	Pfam	PF20647	NA	DUF6808
UHGV-0084657_32	Structural annotation	PF20647	NA	NA
UHGV-0084657_33	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0084657_34	PHROG	phrog_5990	NA	unknown function
UHGV-0084657_34	eggNOG-mapper	1189612.A33Q_1573	NA	NA
UHGV-0084657_34	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-0084657_38	Structural annotation	PF10628	NA	NA
UHGV-0084657_41	PHROG	phrog_35482	NA	unknown function
UHGV-0084657_42	PHROG	phrog_19255	NA	unknown function
UHGV-0084657_42	eggNOG-mapper	1227276.HMPREF9148_00146	NA	NA
UHGV-0084657_43	PHROG	phrog_32516	NA	unknown function
UHGV-0084657_43	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0084657_43	Structural annotation	PF11134, COG3292	NA	NA
UHGV-0084657_50	UniRef90	UniRef90_A0A496CXC5	NA	NA
UHGV-0084657_50	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-0084657_50	Pfam	PF04448	NA	DUF551
UHGV-0084657_50	Structural annotation	PF04448	NA	NA
UHGV-0084657_51	PHROG	phrog_8684	NA	unknown function
UHGV-0084657_51	UniRef90	UniRef90_A0A3L7ZFQ7	YopX domain-containing protein	NA
UHGV-0084657_51	eggNOG-mapper	435591.BDI_0866	YopX protein	NA
UHGV-0084657_51	Pfam	PF09643	YopX protein	YopX
UHGV-0084657_51	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0084657_51	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0084657_53	PHROG	phrog_874	NA	unknown function
UHGV-0084657_53	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0084657_53	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0084657_55	eggNOG-mapper	471870.BACINT_00443	NA	NA
UHGV-0084657_56	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0084657_56	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0084657_56	UniRef90	UniRef90_A6LAB6	Cytosine-specific methyltransferase	NA
UHGV-0084657_56	eggNOG-mapper	435591.BDI_0861	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0084657_56	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0084657_56	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0084657_56	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0084657_56	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0084657_57	PHROG	phrog_8446	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084657_57	UniRef90	UniRef90_A0A6B9L6P3	HNH endonuclease	NA
UHGV-0084657_59	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0084657_59	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0084657_59	UniRef90	UniRef90_D0TA50	ATPase_AAA_core domain-containing protein	NA
UHGV-0084657_59	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-0084657_59	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0084657_59	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0084657_59	Structural annotation	PF00308, MF_01919, NF005931, COG1484	NA	NA
UHGV-0084657_60	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0084657_60	UniRef90	UniRef90_UPI001F23D6D5	NA	NA
UHGV-0084657_60	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0084657_60	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0084657_60	Structural annotation	PF01978, NF033788, COG1846	NA	NA
UHGV-0084657_61	UniRef90	UniRef90_A0A7K0H746	Acetyltransferase	NA
UHGV-0084657_61	eggNOG-mapper	1358423.N180_03020	NA	NA
UHGV-0084657_62	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0084657_62	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-0084657_63	PHROG	phrog_19572	NA	unknown function
UHGV-0084657_63	eggNOG-mapper	1122931.AUAE01000017_gene4240	Phage tail protein	NA
UHGV-0084657_63	Pfam	PF14902	NA	DUF4494