UHGV-0084688

Genome information

Genome length 38,565 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9610

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084688
vOTU ID	vOTU-071290
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_165935
BioSample	SAMEA3136670
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9610
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.28
Jumbo phage	No

Genome content
Genome length	38,565 bps
GC content	28.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	88.62%
Average CDS length	544.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084688_1	Pfam	PF20124	NA	DUF6514
UHGV-0084688_2	KOfam	K03524	birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]	NA
UHGV-0084688_2	UniRef90	UniRef90_R5XM71	Biotin--[acetyl-CoA-carboxylase] ligase	NA
UHGV-0084688_2	eggNOG-mapper	411462.DORLON_00878	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor	NA
UHGV-0084688_2	Pfam	PF03099	Biotin/lipoate A/B protein ligase family	BPL_LplA_LipB
UHGV-0084688_2	NCBIFam	TIGR00121.1	biotin--[acetyl-CoA-carboxylase] ligase	NA
UHGV-0084688_2	COG	COG0340	Biotin-(acetyl-CoA carboxylase) ligase	NA
UHGV-0084688_4	KOfam	K14059	int; integrase	NA
UHGV-0084688_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0084688_4	UniRef90	UniRef90_A0A1Q6LED8	Tyr recombinase domain-containing protein	NA
UHGV-0084688_4	eggNOG-mapper	1462527.CCDM010000010_gene473	Phage integrase family	NA
UHGV-0084688_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0084688_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0084688_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0084688_5	PHROG	phrog_87	metallo-protease	other
UHGV-0084688_5	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0084688_5	eggNOG-mapper	573061.Clocel_2457	Zn peptidase	NA
UHGV-0084688_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0084688_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0084688_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0084688_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0084688_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0084688_6	UniRef90	UniRef90_UPI000F8F6018	helix-turn-helix domain-containing protein	NA
UHGV-0084688_6	eggNOG-mapper	1215915.BN193_09255	Peptidase S24-like	NA
UHGV-0084688_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084688_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084688_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0084688_7	UniRef90	UniRef90_UPI001898FD36	NA	NA
UHGV-0084688_7	eggNOG-mapper	186153.Q8SDN2_BPPHD	NA	NA
UHGV-0084688_7	Pfam	PF05339	NA	DUF739
UHGV-0084688_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0084688_10	PHROG	phrog_2211	NA	unknown function
UHGV-0084688_10	eggNOG-mapper	935948.KE386495_gene1208	NA	NA
UHGV-0084688_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0084688_12	UniRef90	UniRef90_A0A7G5MR42	Siphovirus Gp157 family protein	NA
UHGV-0084688_12	eggNOG-mapper	1232453.BAIF02000010_gene3334	Siphovirus Gp157	NA
UHGV-0084688_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0084688_12	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0084688_13	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0084688_13	UniRef90	UniRef90_A0A6P1TM46	AAA family ATPase	NA
UHGV-0084688_13	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0084688_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0084688_15	PHROG	phrog_18107	NA	unknown function
UHGV-0084688_15	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0084688_15	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0084688_15	Structural annotation	PF05037	NA	NA
UHGV-0084688_16	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0084688_16	UniRef90	UniRef90_UPI0006936C9D	NA	NA
UHGV-0084688_16	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-0084688_16	Pfam	PF06048	NA	DUF927
UHGV-0084688_16	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0084688_16	COG	COG5519	NA	NA
UHGV-0084688_16	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0084688_19	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0084688_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0084688_19	UniRef90	UniRef90_R6I211	DNA or RNA helicases of superfamily II	NA
UHGV-0084688_19	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0084688_19	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0084688_19	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0084688_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0084688_19	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0084688_19	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0084688_24	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0084688_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0084688_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0084688_29	UniRef90	UniRef90_UPI0001668959	terminase small subunit	NA
UHGV-0084688_29	eggNOG-mapper	536232.CLM_2664	Terminase small subunit	NA
UHGV-0084688_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0084688_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0084688_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0084688_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0084688_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0084688_30	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-0084688_30	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0084688_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0084688_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0084688_31	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0084688_31	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0084688_31	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0084688_31	Pfam	PF14359	NA	DUF4406
UHGV-0084688_31	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0084688_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0084688_32	UniRef90	UniRef90_R7FBF4	Putative phage minor capsid protein	NA
UHGV-0084688_32	eggNOG-mapper	1294142.CINTURNW_1024	NA	NA
UHGV-0084688_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0084688_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0084688_33	UniRef90	UniRef90_UPI001D086335	minor capsid protein	NA
UHGV-0084688_33	eggNOG-mapper	1282664.H354_06636	Phage minor capsid protein 2	NA
UHGV-0084688_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0084688_33	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0084688_33	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0084688_35	PHROG	phrog_2546	NA	unknown function
UHGV-0084688_35	UniRef90	UniRef90_A0A174JWQ1	Double zinc ribbon	NA
UHGV-0084688_35	eggNOG-mapper	1280692.AUJL01000025_gene2073	PFAM Mo-dependent nitrogenase	NA
UHGV-0084688_35	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0084688_35	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0084688_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0084688_37	UniRef90	UniRef90_R7FBE8	Phage major capsid protein	NA
UHGV-0084688_37	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0084688_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0084688_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0084688_39	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0084688_40	PHROG	phrog_8710	NA	unknown function
UHGV-0084688_40	eggNOG-mapper	1151292.QEW_2430	NA	NA
UHGV-0084688_40	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0084688_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0084688_41	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0084688_42	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0084688_42	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0084688_42	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0084688_42	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0084688_43	PHROG	phrog_820	major tail protein	tail
UHGV-0084688_43	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0084688_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0084688_44	PHROG	phrog_8300	NA	unknown function
UHGV-0084688_44	Structural annotation	PF06896	NA	NA
UHGV-0084688_45	UniRef90	UniRef90_UPI00040B248B	Gp15 family bacteriophage protein	NA
UHGV-0084688_45	eggNOG-mapper	394503.Ccel_3283	Bacteriophage Gp15 protein	NA
UHGV-0084688_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0084688_45	Structural annotation	PF06854	NA	NA
UHGV-0084688_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0084688_46	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0084688_46	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0084688_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0084688_46	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0084688_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0084688_47	eggNOG-mapper	585501.HMPREF6123_0825	Phage tail tape measure protein, TP901 family	NA
UHGV-0084688_47	COG	COG5412	Phage-related protein	NA
UHGV-0084688_48	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0084688_49	PHROG	phrog_6616	tail protein	tail
UHGV-0084688_49	eggNOG-mapper	1461246.X2KUF9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0084688_49	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0084688_49	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0084688_53	PHROG	phrog_689	holin	lysis
UHGV-0084688_53	UniRef90	UniRef90_UPI000F62D424	hemolysin XhlA family protein	NA
UHGV-0084688_53	eggNOG-mapper	1230342.CTM_01534	Haemolysin XhlA	NA
UHGV-0084688_53	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0084688_54	PHROG	phrog_443	holin	lysis
UHGV-0084688_54	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0084688_54	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0084688_54	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0084688_54	Structural annotation	PF16945	NA	NA
UHGV-0084688_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084688_55	PHROG	phrog_35436	amidase	lysis
UHGV-0084688_55	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-0084688_55	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0084688_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0084688_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0084688_55	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0084688_55	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0084688_56	eggNOG-mapper	1121385.AQXW01000003_gene327	NlpC/P60 family	NA
UHGV-0084688_56	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0084688_56	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0084688_57	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084688_58	PHROG	phrog_2329	NA	unknown function
UHGV-0084688_58	UniRef90	UniRef90_A0A8I1VFN4	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0084688_61	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0084688_61	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0084688_63	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0084688_63	Structural annotation	PF09388	NA	NA