UHGV-0084748

Genome information

Genome length 32,269 bps

CDS count 49

Completeness 89.06% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084748
vOTU ID	vOTU-036420
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_146844
BioSample	SAMEA2737672
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.87
Jumbo phage	No

Genome content
Genome length	32,269 bps
GC content	40.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.30%
Average CDS length	601.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084748_1	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0084748_2	PHROG	phrog_14030	NA	unknown function
UHGV-0084748_2	UniRef90	UniRef90_A0A373N7H3	Peptidase M23	NA
UHGV-0084748_2	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0084748_2	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0084748_2	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0084748_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0084748_2	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0084748_3	PHROG	phrog_13289	tail protein	tail
UHGV-0084748_3	UniRef90	UniRef90_D4M5A0	Phage minor structural protein, N-terminal region	NA
UHGV-0084748_3	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0084748_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0084748_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0084748_3	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0084748_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0084748_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0084748_4	UniRef90	UniRef90_UPI000E50043B	phage tail protein	NA
UHGV-0084748_4	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0084748_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0084748_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0084748_5	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0084748_5	PHROG	phrog_23464	NA	unknown function
UHGV-0084748_5	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0084748_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0084748_7	PHROG	phrog_88	major tail protein	tail
UHGV-0084748_7	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0084748_7	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0084748_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0084748_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0084748_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0084748_8	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0084748_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0084748_8	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0084748_9	Structural annotation	PF05657	NA	NA
UHGV-0084748_10	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0084748_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0084748_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0084748_12	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0084748_12	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0084748_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0084748_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0084748_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0084748_12	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0084748_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0084748_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0084748_13	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0084748_13	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0084748_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0084748_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0084748_13	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0084748_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084748_14	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0084748_14	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0084748_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084748_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0084748_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0084748_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0084748_15	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0084748_15	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0084748_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0084748_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0084748_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0084748_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0084748_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0084748_16	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0084748_16	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0084748_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0084748_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0084748_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084748_17	UniRef90	UniRef90_A0A1Q9J4Z6	HNH domain-containing protein	NA
UHGV-0084748_17	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0084748_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0084748_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0084748_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0084748_18	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0084748_18	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0084748_18	Pfam	PF07374	NA	DUF1492
UHGV-0084748_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0084748_18	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0084748_21	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0084748_21	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0084748_21	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0084748_21	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0084748_21	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0084748_21	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0084748_21	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0084748_25	PHROG	phrog_7566	NA	unknown function
UHGV-0084748_25	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0084748_26	PHROG	phrog_15077	NA	unknown function
UHGV-0084748_26	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0084748_26	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0084748_27	PHROG	phrog_8470	NA	unknown function
UHGV-0084748_27	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0084748_27	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0084748_27	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0084748_27	Structural annotation	PF14284	NA	NA
UHGV-0084748_28	PHROG	phrog_4433	NA	unknown function
UHGV-0084748_28	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0084748_28	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0084748_29	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0084748_30	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0084748_30	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0084748_30	UniRef90	UniRef90_A0A6N9JSQ7	RNase H type-1 domain-containing protein	NA
UHGV-0084748_30	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0084748_30	Pfam	PF00075	RNase H	RNase_H
UHGV-0084748_30	COG	COG0328	Ribonuclease HI	NA
UHGV-0084748_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0084748_32	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0084748_32	Structural annotation	PF01446	NA	NA
UHGV-0084748_36	PHROG	phrog_3882	NA	unknown function
UHGV-0084748_37	PHROG	phrog_3240	NA	unknown function
UHGV-0084748_37	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-0084748_38	eggNOG-mapper	1095750.HMPREF9970_1010	NA	NA
UHGV-0084748_40	PHROG	phrog_11939	NA	unknown function
UHGV-0084748_40	UniRef90	UniRef90_A0A7H1J1A4	NA	NA
UHGV-0084748_40	eggNOG-mapper	148814.JI66_07220	NA	NA
UHGV-0084748_40	Structural annotation	PF13031	NA	NA
UHGV-0084748_42	UniRef90	UniRef90_A0A1C5ULX1	HTH cro/C1-type domain-containing protein	NA
UHGV-0084748_42	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0084748_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084748_42	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0084748_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084748_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084748_43	UniRef90	UniRef90_UPI0006CF5EA8	helix-turn-helix domain-containing protein	NA
UHGV-0084748_43	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084748_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0084748_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084748_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084748_43	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0084748_44	PHROG	phrog_87	metallo-protease	other
UHGV-0084748_44	UniRef90	UniRef90_A0A564SD80	Peptidase_M78 domain-containing protein	NA
UHGV-0084748_44	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0084748_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0084748_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0084748_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0084748_45	Structural annotation	PF21170, NF040959, COG1729	NA	NA
UHGV-0084748_46	PHROG	phrog_9418	NA	unknown function
UHGV-0084748_46	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0084748_46	Structural annotation	PF10233	NA	NA
UHGV-0084748_47	PHROG	phrog_10226	NA	unknown function
UHGV-0084748_47	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0084748_47	Structural annotation	COG4127	NA	NA
UHGV-0084748_49	PHROG	phrog_16228	NA	unknown function
UHGV-0084748_49	UniRef90	UniRef90_A0A173VH75	Uma2 family endonuclease	NA
UHGV-0084748_49	eggNOG-mapper	742765.HMPREF9457_02091	Putative restriction endonuclease	NA
UHGV-0084748_49	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0084748_49	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0084748_49	Structural annotation	PF05685, COG4636	NA	NA