UHGV-0084859

Genome information

Genome length 40,494 bps

CDS count 57

Completeness 69.14% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084859
vOTU ID	vOTU-017965
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_139449
BioSample	SAMEA2737830
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	69.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.49
Jumbo phage	No

Genome content
Genome length	40,494 bps
GC content	49.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.84%
Average CDS length	687.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084859_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0084859_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0084859_1	UniRef90	UniRef90_A0A1M6L678	Phage integrase family protein	NA
UHGV-0084859_1	eggNOG-mapper	742766.HMPREF9455_03139	Phage integrase SAM-like domain	NA
UHGV-0084859_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0084859_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0084859_1	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0084859_3	eggNOG-mapper	1121899.Q764_13580	NA	NA
UHGV-0084859_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0084859_5	UniRef90	UniRef90_G5H733	HTH cro/C1-type domain-containing protein	NA
UHGV-0084859_5	eggNOG-mapper	742725.HMPREF9450_00876	Transcriptional regulator	NA
UHGV-0084859_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084859_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0084859_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0084859_5	Structural annotation	PF01381, PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0084859_6	Structural annotation	NF033948	NA	NA
UHGV-0084859_7	Structural annotation	PF14084	NA	NA
UHGV-0084859_8	PHROG	phrog_17289	NA	unknown function
UHGV-0084859_8	eggNOG-mapper	1236514.BAKL01000055_gene3862	NA	NA
UHGV-0084859_8	Structural annotation	PF11112	NA	NA
UHGV-0084859_11	eggNOG-mapper	1122605.KB893643_gene671	NA	NA
UHGV-0084859_12	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084859_12	UniRef90	UniRef90_A0A316PEM7	PDDEXK_1 domain-containing protein	NA
UHGV-0084859_12	eggNOG-mapper	313596.RB2501_01430	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0084859_12	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0084859_12	COG	COG2887	RecB family exonuclease	NA
UHGV-0084859_13	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0084859_13	eggNOG-mapper	888059.HMPREF9071_2106	NA	NA
UHGV-0084859_13	Structural annotation	PF21662, NF038178	NA	NA
UHGV-0084859_15	PHROG	phrog_15768	NA	unknown function
UHGV-0084859_15	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0084859_15	eggNOG-mapper	411477.PARMER_02072	DnaD domain protein	NA
UHGV-0084859_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0084859_15	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0084859_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0084859_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0084859_16	UniRef90	UniRef90_A0A316PKQ3	Replicative DNA helicase	NA
UHGV-0084859_16	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0084859_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0084859_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0084859_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0084859_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0084859_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0084859_19	UniRef90	UniRef90_UPI001896B453	NA	NA
UHGV-0084859_19	eggNOG-mapper	1243664.CAVL020000020_gene3193	NA	NA
UHGV-0084859_19	Pfam	PF06356	NA	DUF1064
UHGV-0084859_19	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0084859_21	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0084859_22	Structural annotation	PF04448	NA	NA
UHGV-0084859_24	PHROG	phrog_1273	NA	unknown function
UHGV-0084859_25	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0084859_25	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0084859_25	eggNOG-mapper	1121286.AUMT01000013_gene2680	NA	NA
UHGV-0084859_25	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0084859_30	UniRef90	UniRef90_A0A8F1B573	Aspartyl protease	NA
UHGV-0084859_30	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0084859_30	COG	COG3577	Predicted aspartyl protease	NA
UHGV-0084859_31	eggNOG-mapper	1235803.C825_05321	NA	NA
UHGV-0084859_31	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0084859_32	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0084859_32	UniRef90	UniRef90_E5UUW0	DNA methylase N-4/N-6	NA
UHGV-0084859_32	eggNOG-mapper	1122931.AUAE01000005_gene3269	NA	NA
UHGV-0084859_33	UniRef90	UniRef90_A0A388TCE9	Radical SAM protein (Fragment)	NA
UHGV-0084859_33	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0084859_33	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0084859_33	COG	COG1533	DNA repair photolyase	NA
UHGV-0084859_33	Structural annotation	PF20903, MF_01864, NF033668, COG1180	NA	NA
UHGV-0084859_34	eggNOG-mapper	1121097.JCM15093_3234	NA	NA
UHGV-0084859_35	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0084859_35	UniRef90	UniRef90_A0A412YQE4	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0084859_35	eggNOG-mapper	457424.BFAG_02415	Helix-turn-helix of insertion element transposase	NA
UHGV-0084859_35	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0084859_35	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0084859_35	Structural annotation	PF07141	NA	NA
UHGV-0084859_36	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0084859_36	UniRef90	UniRef90_A0A396M1S7	Terminase	NA
UHGV-0084859_36	eggNOG-mapper	1203611.KB894548_gene2449	domain protein	NA
UHGV-0084859_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0084859_36	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0084859_36	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0084859_36	COG	COG5410	NA	NA
UHGV-0084859_36	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0084859_40	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-0084859_42	Structural annotation	PF16774, TIGR01633, COG3499	NA	NA
UHGV-0084859_43	Structural annotation	PF21683	NA	NA
UHGV-0084859_44	PHROG	phrog_14295	NA	unknown function
UHGV-0084859_44	eggNOG-mapper	1235803.C825_02656	NA	NA
UHGV-0084859_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0084859_45	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0084859_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0084859_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0084859_47	UniRef90	UniRef90_A0A379MU54	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0084859_47	eggNOG-mapper	1033732.CAHI01000030_gene1215	Belongs to the peptidase S14 family	NA
UHGV-0084859_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0084859_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0084859_48	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0084859_48	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0084859_48	eggNOG-mapper	742725.HMPREF9450_01068	NA	NA
UHGV-0084859_48	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0084859_51	PHROG	phrog_12	portal protein	head and packaging
UHGV-0084859_51	UniRef90	UniRef90_UPI001CF883FB	phage portal protein	NA
UHGV-0084859_51	eggNOG-mapper	742725.HMPREF9450_01066	Phage portal protein	NA
UHGV-0084859_51	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0084859_51	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0084859_51	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0084859_52	eggNOG-mapper	742725.HMPREF9450_01065	NA	NA
UHGV-0084859_52	Structural annotation	PF20459	NA	NA
UHGV-0084859_54	PHROG	phrog_22609	tail fiber protein	tail
UHGV-0084859_54	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-0084859_55	Structural annotation	PF03370	NA	NA