UHGV-0084907

Genome information

Genome length 38,459 bps

CDS count 54

Completeness 99.59% (high-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0084907
vOTU ID	vOTU-009015
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_144267
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.88
Jumbo phage	No

Genome content
Genome length	38,459 bps
GC content	32.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.81%
Average CDS length	664.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0084907_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0084907_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0084907_1	UniRef90	UniRef90_A0A354HPL0	Recombinase family protein	NA
UHGV-0084907_1	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0084907_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0084907_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0084907_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0084907_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0084907_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0084907_2	PHROG	phrog_5978	NA	unknown function
UHGV-0084907_2	UniRef90	UniRef90_A0A1G5H352	Fic family protein	NA
UHGV-0084907_2	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0084907_2	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0084907_2	COG	COG3177	Fic family protein	NA
UHGV-0084907_2	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0084907_3	UniRef90	UniRef90_A0A348ZC97	UDP-N-acetylglucosamine kinase	NA
UHGV-0084907_3	eggNOG-mapper	246199.CUS_4649	zeta toxin	NA
UHGV-0084907_3	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-0084907_3	COG	COG4185	Predicted ABC-type ATPase or kinase	NA
UHGV-0084907_3	Structural annotation	PF06414, MF_00234, NF041574, COG4185	NA	NA
UHGV-0084907_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0084907_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084907_4	UniRef90	UniRef90_UPI00164BD4EE	helix-turn-helix domain-containing protein	NA
UHGV-0084907_4	eggNOG-mapper	931626.Awo_c14370	Helix-turn-helix XRE-family like proteins	NA
UHGV-0084907_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0084907_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084907_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0084907_5	Structural annotation	PF15968	NA	NA
UHGV-0084907_6	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-0084907_7	PHROG	phrog_1847	NA	unknown function
UHGV-0084907_7	UniRef90	UniRef90_A0A355NQ11	NA	NA
UHGV-0084907_7	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0084907_7	Pfam	PF13250	NA	DUF4041
UHGV-0084907_7	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0084907_7	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0084907_7	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0084907_8	PHROG	phrog_87	metallo-protease	other
UHGV-0084907_8	UniRef90	UniRef90_A7VVX5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0084907_8	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0084907_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0084907_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0084907_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0084907_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0084907_9	UniRef90	UniRef90_UPI00083285BC	helix-turn-helix domain-containing protein	NA
UHGV-0084907_9	eggNOG-mapper	1408438.JADD01000021_gene375	Helix-turn-helix domain	NA
UHGV-0084907_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0084907_9	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0084907_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0084907_10	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0084907_10	eggNOG-mapper	1154757.Q5C_05855	NA	NA
UHGV-0084907_10	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0084907_12	PHROG	phrog_2232	NA	unknown function
UHGV-0084907_12	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0084907_12	eggNOG-mapper	218284.CCDN010000005_gene3396	NA	NA
UHGV-0084907_12	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0084907_12	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0084907_18	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0084907_18	PHROG	phrog_1499	NA	unknown function
UHGV-0084907_18	UniRef90	UniRef90_A0A315Y1S7	Exonuclease SbcC	NA
UHGV-0084907_18	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0084907_18	Pfam	PF13476	AAA domain	AAA_23
UHGV-0084907_18	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0084907_18	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0084907_19	PHROG	phrog_21613	NA	unknown function
UHGV-0084907_19	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0084907_20	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0084907_20	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-0084907_20	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0084907_20	Pfam	PF12684	NA	DUF3799
UHGV-0084907_20	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0084907_20	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0084907_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0084907_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0084907_21	UniRef90	UniRef90_A0A7C7EMB2	Single-stranded DNA-binding protein	NA
UHGV-0084907_21	eggNOG-mapper	428125.CLOLEP_03546	Single-stranded DNA-binding protein	NA
UHGV-0084907_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0084907_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0084907_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0084907_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0084907_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0084907_22	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0084907_22	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0084907_22	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0084907_22	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0084907_22	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0084907_23	PHROG	phrog_277	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0084907_23	UniRef90	UniRef90_K2G5E4	Phage_rep_O domain-containing protein	NA
UHGV-0084907_23	eggNOG-mapper	1230341.MJ3_13494	Bacteriophage replication protein O	NA
UHGV-0084907_23	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0084907_23	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0084907_23	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0084907_26	Structural annotation	PF09889	NA	NA
UHGV-0084907_27	Structural annotation	PF04012	NA	NA
UHGV-0084907_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0084907_28	UniRef90	UniRef90_A0A6B3W4B2	NA	NA
UHGV-0084907_28	eggNOG-mapper	1408303.JNJJ01000084_gene2550	NA	NA
UHGV-0084907_28	Pfam	PF07374	NA	DUF1492
UHGV-0084907_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0084907_28	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0084907_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0084907_30	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0084907_30	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-0084907_30	Structural annotation	PF07141	NA	NA
UHGV-0084907_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0084907_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0084907_31	UniRef90	UniRef90_UPI001B3C8BA8	terminase family protein	NA
UHGV-0084907_31	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0084907_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0084907_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0084907_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0084907_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0084907_32	UniRef90	UniRef90_UPI001B3C997D	phage capsid protein	NA
UHGV-0084907_32	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0084907_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0084907_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0084907_33	UniRef90	UniRef90_UPI001B3C97A7	phage minor capsid protein	NA
UHGV-0084907_33	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0084907_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0084907_33	COG	COG2369	NA	NA
UHGV-0084907_33	Structural annotation	PF06152, COG2369	NA	NA
UHGV-0084907_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0084907_35	UniRef90	UniRef90_UPI001B3C6D0D	phage scaffolding protein	NA
UHGV-0084907_35	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0084907_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0084907_35	Structural annotation	PF06810	NA	NA
UHGV-0084907_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0084907_36	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0084907_36	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0084907_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0084907_37	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0084907_37	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0084907_38	PHROG	phrog_3366	NA	unknown function
UHGV-0084907_38	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0084907_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0084907_39	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0084907_39	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0084907_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0084907_39	Structural annotation	PF11114	NA	NA
UHGV-0084907_40	PHROG	phrog_3266	tail completion	connector
UHGV-0084907_40	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0084907_40	Structural annotation	PF20765	NA	NA
UHGV-0084907_41	PHROG	phrog_3099	NA	unknown function
UHGV-0084907_41	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0084907_41	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0084907_42	PHROG	phrog_11299	NA	unknown function
UHGV-0084907_42	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0084907_42	Structural annotation	PF10666	NA	NA
UHGV-0084907_43	PHROG	phrog_706	NA	unknown function
UHGV-0084907_43	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0084907_43	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0084907_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0084907_43	Structural annotation	PF06854	NA	NA
UHGV-0084907_44	PHROG	phrog_9700	NA	unknown function
UHGV-0084907_44	UniRef90	UniRef90_UPI001B3C6D17	leucine-rich repeat protein	NA
UHGV-0084907_44	eggNOG-mapper	476272.RUMHYD_01979	NA	NA
UHGV-0084907_44	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0084907_44	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0084907_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0084907_45	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0084907_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0084907_46	PHROG	phrog_1194	NA	unknown function
UHGV-0084907_46	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0084907_46	Pfam	PF20458	NA	DUF6711
UHGV-0084907_46	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0084907_47	PHROG	phrog_18190	NA	unknown function
UHGV-0084907_47	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0084907_47	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0084907_50	PHROG	phrog_918	NA	unknown function
UHGV-0084907_50	UniRef90	UniRef90_UPI001F22DD3C	NA	NA
UHGV-0084907_50	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0084907_50	Pfam	PF19791	NA	DUF6275
UHGV-0084907_50	Structural annotation	PF19791	NA	NA
UHGV-0084907_51	PHROG	phrog_199	holin	lysis
UHGV-0084907_51	UniRef90	UniRef90_A0A348ZBJ4	Holin	NA
UHGV-0084907_51	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0084907_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0084907_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0084907_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0084907_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0084907_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0084907_52	PHROG	phrog_670	endolysin	lysis
UHGV-0084907_52	UniRef90	UniRef90_A0A348ZBJ3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0084907_52	eggNOG-mapper	1232453.BAIF02000013_gene3229	Ami_2	NA
UHGV-0084907_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0084907_52	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0084907_52	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0084907_54	Structural annotation	PF11031	NA	NA